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Updated: Apr 29, 2026

Oncogenic Gene Fusion Detection Using Anchored Multiplex Polymerase Chain Reaction Followed by Next Generation Sequencing
Published on: July 5, 2019
Chromosome aberrations and HEY1-NCOA2 fusion gene in a mesenchymal chondrosarcoma
Ioannis Panagopoulos1, Ludmila Gorunova1, Bodil Bjerkehagen2
1Section for Cancer Cytogenetics, Institute for Cancer Genetics and Informatics, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway.
Abstract:
Mesenchymal chondrosarcomas are fast-growing tumors that account for 2-10% of primary chondrosarcomas. Cytogenetic information is restricted to 12 cases that did not show a specific aberration pattern. Recently, two fusion genes were described in mesenchymal chondrosarcomas: a recurrent HEY1-NCOA2 found in tumors that had not been cytogenetically characterized and an IRF2BP2-CDX1 found in a tumor carrying a t(1;5)(q42;q32) translocation as the sole chromosomal abnormality. Here, we present the cytogenetic and molecular genetic analysis of a mesenchymal chondrosarcoma in which the patient had two histologically indistinguishable tumor lesions, one in the neck and one in the thigh. An abnormal clone with the G-banding karyotype 46,XX,add(6)(q23),add(8)(p23),del(10)(p11),+12,-15[6] was found in the neck tumor whereas a normal karyotype, 46,XX, was found in the tumor of the thigh. RT-PCR and Sanger sequencing showed that exon 4 of HEY1 was fused to exon 13 of NCOA2 in the sample from the thigh lesion; we did not have spare material to perform a similar analysis of the neck tumor. Examining the published karyotypes we observed numerical or structural aberrations of chromosome 8 in the majority of the karyotyped mesenchymal chondrosarcomas. Chromosome 8 was also structurally affected in the present study. The pathogenetic mechanisms behind this nonrandom involvement are unknown, but the presence on 8q of two genes, HEY1 and NCOA2, now known to be involved in mesenchymal chondrosarcoma tumorigenesis is, of course, suggestive.
Insights
Mesenchymal chondrosarcoma genetic analysis revealed a HEY1-NCOA2 fusion gene in one tumor lesion. Aberrations in chromosome 8 were common in this rare, fast-growing bone cancer.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Mesenchymal chondrosarcoma is a rare, aggressive bone tumor.
- Limited cytogenetic data exists for this tumor type.
- Previous studies identified HEY1-NCOA2 and IRF2BP2-CDX1 fusion genes.
Observation:
- This study analyzed two distinct mesenchymal chondrosarcoma lesions from a single patient.
- The thigh tumor exhibited a normal karyotype, while the neck tumor showed chromosomal abnormalities.
- RT-PCR and sequencing identified the HEY1-NCOA2 fusion gene in the thigh tumor.
Findings:
- The HEY1-NCOA2 fusion gene was detected in one of the mesenchymal chondrosarcoma lesions.
- Structural aberrations involving chromosome 8 were observed in the neck tumor and in previously reported cases.
- Chromosome 8 harbors the HEY1 and NCOA2 genes, suggesting their potential role in tumorigenesis.
Implications:
- The findings contribute to understanding the genetic landscape of mesenchymal chondrosarcoma.
- Identifying recurrent gene fusions like HEY1-NCOA2 may aid in diagnosis and targeted therapies.
- Further research into chromosome 8 aberrations could elucidate pathogenetic mechanisms.
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