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Updated: Apr 29, 2026

Production, Crystallization and Structure Determination of C. difficile PPEP-1 via Microseeding and Zinc-SAD
Published on: December 30, 2016
Crystal structure of the secreted protein HP1454 from the human pathogen Helicobacter pylori
Sandra Quarantini1, Laura Cendron, Giuseppe Zanotti
1Department of Biomedical Sciences, University of Padua, Viale G. Colombo 3, Padua, 35131, Italy.
Abstract:
HP1454 is a protein of 303 amino acids found in the extracellular milieu of Helicobacter pylori. The protein structure, crystallized in the orthorhombic C222₁ space group with one molecule per asymmetric unit, has been determined using the single-wavelength anomalous dispersion method. HP1454 exhibits an elongated bent shape, composed of three distinct domains. Each domain possesses a fold already present in other structures: Domain I contains a three-strand antiparallel β-barrel flanked by a long α-helix, Domain II is an anti-parallel three-helix bundle, and Domain III a β-sheet flanked by two α-helices. The overall assembly of the protein does not bear any similarity with known structures.
Insights
The structure of Helicobacter pylori protein HP1454 was determined, revealing an elongated, bent shape with three distinct domains. Its unique overall assembly is unlike any previously known protein structures.
Area of Science:
- Structural biology
- Microbiology
- Protein science
Background:
- Helicobacter pylori is a significant human pathogen.
- Understanding bacterial protein structures is crucial for drug development.
- HP1454 is an extracellular protein from H. pylori.
Purpose of the Study:
- To determine the three-dimensional structure of the HP1454 protein.
- To characterize the structural features and domain organization of HP1454.
- To investigate the novelty of its overall protein assembly.
Main Methods:
- X-ray crystallography was employed for structure determination.
- Single-wavelength anomalous dispersion (SAD) method was utilized.
- The protein was crystallized in the orthorhombic C222₁ space group.
Main Results:
- The crystal structure of HP1454 (303 amino acids) was solved.
- HP1454 exhibits an elongated, bent conformation.
- The protein comprises three distinct domains, each with known folds but a novel overall assembly.
Conclusions:
- HP1454 possesses a unique three-domain architecture.
- The protein's overall structure is dissimilar to any previously characterized protein structures.
- This structural information provides a basis for further functional studies of HP1454.
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