Related Experiment Video
Updated: Apr 29, 2026

Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography
Published on: September 20, 2016
Anion receptors based on highly fluorinated aromatic scaffolds
Neetha Mohan1, Cherumuttathu H Suresh
1Inorganic and Theoretical Chemistry Section, CSTD, CSIR-National Institute for Interdisciplinary Science and Technology , Trivandrum 695 019, India.
New hexafluorobenzene (HFB) receptors with fluorinated aromatic groups show enhanced binding for small molecules and anions. Increasing fluorination significantly boosts complexation energy through lone pair-π interactions.
Area of Science:
- Supramolecular Chemistry
- Computational Chemistry
- Materials Science
Background:
- Hexafluorobenzene (HFB) scaffolds are explored for molecular recognition.
- Designing effective receptors for small molecules and anions remains a challenge.
Purpose of the Study:
- To investigate novel HFB-based receptors with varying degrees of pentafluorobenzyl substitution.
- To evaluate the complexation energies and interaction mechanisms with diverse guest molecules.
- To establish a design strategy for enhanced molecular recognition.
Main Methods:
- Density Functional Theory (DFT) calculations using the M06L/6-311++G(d,p) level of theory.
- Modeling of receptor-guest complexes, including hexafluorobenzene (HFB), R(I), R(II), and R(III) receptors.
- Analysis of electron density and molecular electrostatic potential to understand interaction mechanisms.
Main Results:
- Complexation energy (E(int)) increases with the number of fluorinated aromatic moieties in the receptor.
- Lone pair-π interactions are identified as the key binding mechanism.
- Receptor R(III) showed the most significant increase in E(int) (1.8-4.7 fold) compared to HFB.
- Specific example: HFB···F(-) E(int) = -21.1 kcal/mol, while R(III)···F(-) E(int) = -50.5 kcal/mol.
Conclusions:
- Tuning lone pair-π interactions is a powerful strategy for designing receptors.
- Substituted HFB scaffolds offer tunable properties for selective molecular recognition.
- These findings pave the way for developing advanced sensors and separation materials.
More Related Videos
14:02Optimizing the Genetic Incorporation of Chemical Probes into GPCRs for Photo-crosslinking Mapping and Bioorthogonal Chemistry in Live Mammalian Cells
Published on: April 9, 2018
16:16Genetically-encoded Molecular Probes to Study G Protein-coupled Receptors
Published on: September 13, 2013
Related Concept Videos
Aromatic Hydrocarbon Anions: Structural Overview
Due to the absence of continuous...
Electrophilic Aromatic Substitution: Fluorination and Iodination of Benzene
Adrenergic Agonists: Chemistry and Structure-Activity Relationship
Aromatic ring substitutions: Substituting the aromatic ring with –OH groups at positions 3 and 4 yields catecholamines (e.g., epinephrine), which have a high affinity for adrenoceptors. Hydrogen bonding between –OH groups and receptors enhances adrenergic activity.
Separation of...
Aromatic Hydrocarbon Cations: Structural Overview
Removing one hydrogen from the intervening CH2 group...
ortho–para-Directing Activators: –CH3, –OH, –⁠NH2, –OCH3
Physical Properties of Amines