Modeling the effect of phase II conjugations on topoisomerase I poisoning: pilot study with luteolin and quercetin

Luca Dellafiora1, Pedro Mena, Daniele Del Rio

  • 1Molecular Modeling Laboratory, Department of Food Science, ‡The Laboratory of Phytochemicals in Physiology, Human Nutrition Unit, Department of Food Science, and §LS9 Bioactives and Health, Interlaboratory Group, Department of Food Science, University of Parma , 43125 Parma, Italy.

Insights

Flavonoid metabolites, like quercetin-3-O-glucuronide, may impact cancer chemotherapy by affecting human Topoisomerase I. This study computationally models how metabolism influences these topoisomerase poisons.

Area of Science:

  • Biochemistry
  • Pharmacology
  • Computational Chemistry

Background:

  • Topoisomerases are crucial enzymes in cell viability and targets for cancer chemotherapy.
  • Flavonoids and their glycosides are dietary compounds with potential health benefits, including topoisomerase poisoning.
  • Previous research overlooked the metabolic transformations of flavonoids after ingestion, which are critical for their biological activity.

Purpose of the Study:

  • To computationally model the impact of hepatic phase II conjugative metabolism on the topoisomerase poisoning activity of dietary flavonoids.
  • To identify potential flavonoid metabolites that could be prioritized for further experimental characterization.

Main Methods:

  • Development of an in silico computational procedure.
  • Modeling of glucuronidation and sulphation, key hepatic phase II metabolic reactions.
  • Focus on ubiquitous dietary flavonoids luteolin and quercetin.

Main Results:

  • Glucuronidation of flavonoids may enhance topoisomerase poisoning activity.
  • Sulphation of flavonoids may quench topoisomerase poisoning activity.
  • Quercetin-3-O-glucuronide emerged as a particularly promising metabolite for further investigation.

Conclusions:

  • Metabolic modifications significantly alter the topoisomerase poisoning potential of dietary flavonoids.
  • In silico approaches are valuable for prioritizing flavonoid metabolites for drug development and cancer research.
  • Quercetin-3-O-glucuronide warrants further experimental validation for its role in topoisomerase inhibition.

Related Concept Videos

Phase II Reactions: Miscellaneous Conjugation Reactions01:19

Phase II Reactions: Miscellaneous Conjugation Reactions

Phase II biotransformations are detoxification mechanisms that conjugate xenobiotics with endogenous substances, neutralizing their toxicity.
A key example involves the conjugation of cyanide ions, which impair cellular respiration and alter hemoglobin into non-oxygen-carrying cyanmethemoglobin. To neutralize this threat, a sulfur atom from thiosulphate is transferred to the cyanide ion, catalyzed by the enzyme rhodanese, resulting in an inactive compound called thiocyanate. The production of...
471
Inhibitors of Bacterial DNA Synthesis01:28

Inhibitors of Bacterial DNA Synthesis

Bacterial pathogens depend on precise and efficient DNA replication to sustain infection. Two type II topoisomerases—DNA gyrase and topoisomerase IV—are critical to this process, as they resolve DNA supercoiling and unlink chromosomes during replication. Fluoroquinolones, synthetic derivatives of quinolones, exploit this mechanism by stabilizing the transient DNA–enzyme cleavage complex, preventing strand religation, and causing lethal double-strand breaks. These...
125
Phase II Conjugation Reactions: Overview01:14

Phase II Conjugation Reactions: Overview

Conjugation, a key component of phase II biotransformation reactions, is a vital process in drug detoxification. It involves transferring endogenous substances like glucuronic acid, sulfate, and glycine to drugs or their metabolites formed in phase I reactions. These conjugation reactions, often catalyzed by specific enzymes, transform potentially harmful metabolites into inactive, water-soluble forms easily excreted in urine or bile. By enhancing polarity and eliminating pharmacological...
1.3K
DNA Topoisomerases02:02

DNA Topoisomerases

Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
32.2K
Pharmacogenetics of Phase II Enzymes: N-acetyltransferase, Thiopurine S-methyltransferase, UDP-glucuronosyltransferase01:27

Pharmacogenetics of Phase II Enzymes: N-acetyltransferase, Thiopurine S-methyltransferase, UDP-glucuronosyltransferase

Phase II biotransformation reactions are essential for detoxifying and eliminating xenobiotics, including many pharmaceutical compounds. These reactions typically involve conjugation, the covalent attachment of polar endogenous groups such as glucuronic acid, sulfate, methyl, or acetyl moieties to functional groups introduced during Phase I metabolism. The resulting conjugates are more water-soluble, enabling efficient renal or biliary excretion.The major classes of Phase II enzymes include...
93
Phase II Reactions: Sulfation and Conjugation with α-Amino Acids01:19

Phase II Reactions: Sulfation and Conjugation with α-Amino Acids

Sulfation and α-amino acid conjugation are two critical biotransformation reactions in drug metabolism. Sulfation, a phase II biotransformation reaction, involves adding a polar sulfate group to a drug, enhancing its water solubility and promoting excretion. This process can either co-occur with or occur independently of glucuronidation. Nonmicrosomal sulfotransferase enzymes catalyze the process. The reaction involves 3'-phosphoadenosine-5'-phosphosulfate or PAPS coenzyme...
1.3K