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Isolation and Identification of Waterborne Antibiotic-Resistant Bacteria and Molecular Characterization of their Antibiotic Resistance Genes
Published on: March 3, 2023
Molecular characterization of clinical multidrug-resistant Klebsiella pneumoniae isolates
Xiaoli Cao, Xuejing Xu, Zhifeng Zhang
1Department of Laboratory Medicine, Nanjing Drum Tower Hospital, the affiliated Hospital of Nanjing University Medical School, Zhongshan Road, 321#, Gulou District, Nanjing, Jiangsu Province 210008, PR China. zhangkui6103@163.com.
Background:
Klebsiella pneumoniae is a frequent nosocomial pathogen, with the multidrug-resistant (MDR) K. pneumoniae being a major public health concern, frequently causing difficult-to-treat infections worldwide. The aim of this study was to investigate the molecular characterization of clinical MDR Klebsiella pneumoniae isolates.
Methods:
A total of 27 non-duplicate MDR K. pneumoniae isolates with a CTX-CIP-AK resistance pattern were investigated for the prevalence of antimicrobial resistance genes including extended spectrum β-lactamase genes (ESBLs), plasmid-mediated quinolone resistance (PMQR) genes, 16S rRNA methylase (16S-RMTase) genes, and integrons by polymerase chain reaction (PCR) amplification and DNA sequencing. Plasmid replicons were typed by PCR-based replicon typing (PBRT). Multi-locus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE) were carried out to characterize the strain relatedness.
Results:
All the isolates co-harbored 3 or more resistance determinants. OqxAB, CTX-M-type ESBLs and RmtB were the most frequent determinants, distributed among 19 (70.4%),18 (66.7%) and 8 (29.6%) strains. Fourteen isolates harbored class 1 integrons, with orfD-aacA4 being the most frequent gene cassette array. Class 3 integrons were less frequently identified and contained the gene cassette array of blaGES-1-blaOXA-10-aac(6')-Ib. IncFII replicon was most commonly found in this collection. One cluster was observed with ≥80% similarity among profiles obtained by PFGE, and one sequence type (ST) by MLST, namely ST11, was observed in the cluster.
Conclusion:
K. pneumoniae carbapenemase (KPC)-producing ST11 was the main clone detected. Of particular concern was the high prevalence of multiple resistance determinants, classs I integrons and IncFII plasmid replicon among these MDR strains, which provide advantages for the rapid development of MDR strains.
Insights
Multidrug-resistant Klebsiella pneumoniae, a major global health threat, was molecularly characterized. The study identified KPC-producing ST11 as the main clone, highlighting concerns over prevalent resistance determinants and integrons.
Area of Science:
- Microbiology
- Infectious Diseases
- Genetics
Background:
- Klebsiella pneumoniae is a significant nosocomial pathogen.
- Multidrug-resistant (MDR) K. pneumoniae poses a global health challenge due to difficult-to-treat infections.
Purpose of the Study:
- To conduct a molecular characterization of clinical MDR K. pneumoniae isolates.
- To investigate the prevalence of antimicrobial resistance genes and genetic relatedness.
Main Methods:
- Polymerase chain reaction (PCR) amplification and DNA sequencing were used to detect resistance genes (ESBLs, PMQR, 16S-RMTase) and integrons.
- Plasmid replicons were typed using PCR-based replicon typing (PBRT).
- Multi-locus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE) were employed for strain characterization.
Main Results:
- All 27 MDR K. pneumoniae isolates harbored at least three resistance determinants.
- OqxAB, CTX-M-type ESBLs, and RmtB were the most frequent determinants.
- Class 1 integrons were prevalent, and the ST11 sequence type was identified in a major cluster.
Conclusions:
- KPC-producing ST11 was identified as the dominant clone.
- High prevalence of multiple resistance determinants, class 1 integrons, and IncFII plasmid replicons were observed.
- These factors contribute to the rapid development and spread of MDR K. pneumoniae strains.
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