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Performing Data Mining And Integrative Analysis Of Biomarker in Breast Cancer Using Multiple Publicly Accessible Databases
Published on: May 17, 2019
A single nucleotide polymorphism in PIK3CA gene is inversely associated with P53 protein expression in breast cancer
Bo Pang1, Shi-Peng Sun, Lei Gao
1Clinical Laboratory, Guang'anmen Hospital, China Academy of Chinese Medical Sciences, Beixian Ge 5#, XiCheng District, Beijing, 100053, China.
Abstract:
Single nucleotide polymorphism (SNP) rs17849071 was recently reported to be inversely associated with PIK3CA amplification in follicular thyroid cancer, but the main function of this SNP remains unclear. In this study, by using PCR and sequencing method, we explored whether this SNP was associated with P53 expression status and other clinicopathological characteristics in 62 Chinese breast cancer (BCa) patients. In our results, P53 protein accumulation was significantly associated with HER2 overexpression (P = 0.013) and Ki-67 expression (P = 0.007), which were in accord with previous studies. Besides, there was a significantly inverse relationship between P53 protein expression and rs17849071 GT+GG genotype in Chinese BCa patients (P = 0.044). The SNP was not related to other important BCa markers such as estrogen receptor, progestin receptor, and HER2. Among different BCa intrinsic subtypes, no significant differences were found on P53 expression status (P = 0.356) or rs17849071 polymorphism (T>G) (P = 0.813). In conclusion, SNP rs17849071 GT+GG genotype was inversely associated with P53 protein accumulation in BCa samples. Studies with larger sample size focusing on exploring the relationship of rs17849071 polymorphisms, P53 accumulation, P53 mutations, and PIK3CA amplification might be needed.
Insights
Single nucleotide polymorphism (SNP) rs17849071’s GT+GG genotype is inversely associated with P53 protein accumulation in Chinese breast cancer (BCa) patients. This finding may offer new insights into BCa pathogenesis and treatment strategies.
Area of Science:
- Genetics
- Oncology
- Molecular Biology
Background:
- Single nucleotide polymorphism (SNP) rs17849071 has been linked to PIK3CA amplification in thyroid cancer.
- The precise role of SNP rs17849071 in other cancers, like breast cancer (BCa), remains largely uncharacterized.
Purpose of the Study:
- To investigate the association between SNP rs17849071 and P53 expression status in Chinese breast cancer patients.
- To explore the relationship between SNP rs17849071 and other clinicopathological characteristics of breast cancer.
Main Methods:
- Polymerase Chain Reaction (PCR) and sequencing were employed to genotype SNP rs17849071.
- P53 protein expression levels were assessed in 62 Chinese breast cancer samples.
Main Results:
- P53 protein accumulation showed significant associations with HER2 overexpression (P = 0.013) and Ki-67 expression (P = 0.007).
- A significant inverse relationship was observed between P53 protein expression and the rs17849071 GT+GG genotype (P = 0.044).
- SNP rs17849071 was not found to be related to estrogen receptor, progestin receptor, or HER2 status, nor did it differ across breast cancer intrinsic subtypes.
Conclusions:
- The rs17849071 GT+GG genotype is inversely associated with P53 protein accumulation in breast cancer.
- Further large-scale studies are warranted to elucidate the complex interplay between rs17849071 polymorphisms, P53 status, and PIK3CA amplification in breast cancer.
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