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Updated: Apr 28, 2026

Microcrystal Electron Diffraction of Small Molecules
Published on: March 15, 2021
Transmission electron microscopy as a tool for nanocrystal characterization pre- and post-injector.
H P Stevenson1, D P DePonte2, A M Makhov1
1Department of Structural Biology, University of Pittsburgh School of Medicine, 1040 Biomedical Science Tower 3, Pittsburgh, PA 15260, USA.
Transmission electron microscopy effectively evaluates nanometre-sized crystals (NCs) for X-ray free-electron laser (XFEL) experiments. This method assesses crystal quality and concentration, crucial for determining protein structures from small crystals.
Area of Science:
- Structural biology
- Biophysics
- Materials science
Background:
- Advancements in X-ray free-electron laser (XFEL) sources enable serial femtosecond diffraction with nanometre-sized crystals (NCs).
- This technique is vital for determining structures of proteins, especially membrane proteins, that yield only submicrometre crystals.
- Efficient use of limited XFEL beamtime necessitates thorough pre-characterization of NCs and sample delivery methods.
Purpose of the Study:
- To demonstrate the utility of transmission electron microscopy (TEM) for evaluating nanometre-sized crystals (NCs) in liquid injector solutions.
- To assess the impact of sample delivery processes on NC concentration and diffraction quality.
- To provide a method for pre-characterizing NCs for XFEL serial femtosecond diffraction experiments.
Main Methods:
- Utilized transmission electron microscopy (TEM) to examine nanometre-sized crystals (NCs) in liquid injector carrier solutions.
- Evaluated crystal lattice and calculated fast Fourier transforms (FFTs) from TEM images to assess diffraction quality.
- Analyzed both injector reservoir solutions and post-injection solutions for three protein NC types: PTHR1, Pol II-GFP, and lysozyme.
Main Results:
- TEM successfully detected and evaluated nanometre-sized crystals (NCs) within liquid injector solutions.
- The concentration and diffraction quality of NCs can be affected by the sample delivery process.
- High solvent content and mechanically sensitive NCs showed particular susceptibility to changes during delivery.
Conclusions:
- Transmission electron microscopy (TEM) is a valuable tool for pre-characterizing nanometre-sized crystals (NCs) for XFEL serial femtosecond diffraction.
- The sample delivery process can impact the quality and concentration of NCs, necessitating careful optimization.
- This evaluation method ensures efficient use of XFEL beamtime and improves the success rate of structure determination from small protein crystals.
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