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Related Concept Videos

Unit Cells01:18

Unit Cells

126
A crystal's internal structure is an orderly array of atoms, ions, or molecules, and the details of this array significantly influence the solid's properties. In a crystal, periodically repeating 'structural motifs' - which could be atoms, molecules, or groups thereof - create a 'space lattice.' This is essentially a three-dimensional, infinite array of points, each surrounded by its neighbors in an identical way, forming the basic structure of the crystal.A 'unit cell' is a theoretical...
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Lattice Centering and Coordination Number02:33

Lattice Centering and Coordination Number

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The structure of a crystalline solid, whether a metal or not, is best described by considering its simplest repeating unit, which is referred to as its unit cell. The unit cell consists of lattice points that represent the locations of atoms or ions. The entire structure then consists of this unit cell repeating in three dimensions. The three different types of unit cells present in the cubic lattice are illustrated in Figure 1.
Types of Unit Cells
Imagine taking a large number of identical...
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Structures of Solids02:22

Structures of Solids

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Solids in which the atoms, ions, or molecules are arranged in a definite repeating pattern are known as crystalline solids. Metals and ionic compounds typically form ordered, crystalline solids. A crystalline solid has a precise melting temperature because each atom or molecule of the same type is held in place with the same forces or energy. Amorphous solids or non-crystalline solids (or, sometimes, glasses) which lack an ordered internal structure and are randomly arranged. Substances that...
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Phasing coherently illuminated nanocrystals bounded by partial unit cells.

Richard A Kirian1, Richard J Bean2, Kenneth R Beyerlein2

  • 1Center for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron, Notkestrasse 85, Hamburg 22607, Germany richard.kirian@desy.de.

Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences
|June 11, 2014
PubMed
Summary

Free-electron laser X-ray pulses capture detailed protein nanocrystal diffraction data. Researchers developed a new method to solve the phase problem for nanocrystals with random edge terminations, enabling more complete structure determination.

Keywords:
coherent diffractive imagingfree-electron laserprotein crystallography

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Area of Science:

  • Structural Biology
  • Biophysics
  • Crystallography

Background:

  • Free-electron lasers (FELs) provide femtosecond X-ray pulses, enabling high-resolution diffraction data collection from protein nanocrystals.
  • Conventional crystallography faces limitations with small or incomplete crystals, hindering phase retrieval.

Purpose of the Study:

  • To extend phase retrieval methods using FEL diffraction data to nanocrystals with partial unit cells due to random edge terminations.
  • To reformulate and address the phase problem for such challenging crystal systems.

Main Methods:

  • Utilizing highly coherent femtosecond X-ray pulses from an FEL to record diffraction patterns.
  • Developing and applying iterative algorithms for phase retrieval from nanocrystal diffraction data.
  • Investigating nanocrystals with random edge terminations and partial unit cells.

Main Results:

  • Demonstrated that FEL diffraction data contains more information than conventional data.
  • Successfully reformulated the phase problem for nanocrystals lacking a common repeating unit cell.
  • Provided an approximate solution for the phase problem in crystals with random edge terminations.

Conclusions:

  • The developed approach allows for phase retrieval from challenging nanocrystal samples.
  • This method enhances the potential of FELs for determining protein structures from limited or imperfect crystals.
  • Advances in solving the phase problem open new avenues in structural biology.