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X-ray Crystallography02:18

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The size of the unit cell and the arrangement of atoms in a crystal may be determined from measurements of the diffraction of X-rays by the crystal, termed X-ray crystallography.
Diffraction
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X-ray diffraction or XRD is an analytical tool that utilizes X-rays to study ordered structures such as crystalline organic and inorganic samples, polycrystalline materials, proteins, carbohydrates, and drugs.
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In the late 1800s, the revelation that light extended beyond visible wavelengths led to the discovery of X-rays by Wilhelm Roentgen. Recognized as high-energy electromagnetic radiation with short wavelengths, X-rays prompted exploration into their interaction with crystals. Max von Laue proposed in 1912 that the periodic arrangement of atoms, ions, or molecules in crystals would cause them to diffract X-rays, a hypothesis confirmed through experiments with copper sulfate and zinc sulfide...
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Related Experiment Video

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Structural Studies of Macromolecules in Solution using Small Angle X-Ray Scattering
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Structural Studies of Macromolecules in Solution using Small Angle X-Ray Scattering

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Using small angle solution scattering data in Xplor-NIH structure calculations.

Charles D Schwieters1, G Marius Clore2

  • 1Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Building 12A, Bethesda, MD 20892-5624, United States.

Progress in Nuclear Magnetic Resonance Spectroscopy
|June 14, 2014
PubMed
Summary
This summary is machine-generated.

Small and wide angle X-ray and neutron scattering data aid biomolecular structure calculation with Xplor-NIH. Scattering data provides structural restraints for proteins and nucleic acids, including large molecules and dynamic motions.

Keywords:
NMR restraintsSANSSAXSStructure determinationWAXS

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Area of Science:

  • Biophysics
  • Structural Biology
  • Biochemistry

Background:

  • Biomolecular structure determination is crucial for understanding biological function.
  • Integrating multiple biophysical techniques can improve structural accuracy.
  • Nuclear Magnetic Resonance (NMR) data is a common input for structure calculations.

Purpose of the Study:

  • To describe the application of X-ray and neutron scattering data in biomolecular structure calculation.
  • To demonstrate the use of scattering data as structural restraints within the Xplor-NIH program.
  • To review diverse examples of scattering data integration in structure determination.

Main Methods:

  • Utilizing small and wide angle X-ray scattering (SAXS/WAXS) and small angle neutron scattering (SANS).
  • Employing the Xplor-NIH software package for structure calculations.
  • Implementing scattering data as restraints in computational modeling.

Main Results:

  • Scattering data can be effectively incorporated into Xplor-NIH for structure calculation, with or without NMR data.
  • Algorithms for calculating scattering curves are detailed.
  • Examples showcase the utility for single-domain proteins, nucleic acids, and large proteins.

Conclusions:

  • Scattering techniques provide valuable constraints for determining biomolecular structures.
  • Xplor-NIH facilitates the integration of scattering data into structure calculation workflows.
  • Ensemble representations can characterize molecular motions using scattering data.