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Updated: Apr 28, 2026

Integration of Wet and Dry Bench Processes Optimizes Targeted Next-generation Sequencing of Low-quality and Low-quantity Tumor Biopsies
Published on: April 11, 2016
Clinical activity of FOLFIRI plus cetuximab according to extended gene mutation status by next-generation sequencing:
F Ciardiello1, N Normanno2, E Maiello3
1Department of Clinical and Experimental Medicine 'F. Magrassi', Medical Oncology, Second University of Naples, Naples.
Background:
Treatment with antiepidermal growth factor receptor (anti-EGFR) monoclonal antibodies has been restricted to metastatic colorectal cancer (mCRC) patients with RAS wild-type tumors. Next-generation sequencing (NGS) allows the assessment in a single analysis of a large number of gene alterations and might provide important predictive and prognostic information.
Patients And Methods:
In the CAPRI-GOIM trial, 340 KRAS exon 2 wild-type mCRC patients received first-line FOLFIRI plus cetuximab. Tumor samples (182/340, 53.5%) were assessed by NGS to search for mutations in 22 genes involved in colon cancer.
Results:
Objective responses in the NGS cohort were observed in 104/182 patients [overall response rate (ORR) 57.1%; 95% confidence interval (95% CI) 52% to 66.4%] with a median progression-free survival (mPFS) of 9.8 (95% CI 8.7-11.5) months. NGS analysis was successfully completed in all 182 samples. One or more gene mutations (up to five) were detected in 124/182 (68.1%) tumors within 14/22 genes for a total of 206 mutations. KRAS exon 2 mutations were identified in 29/182 (15.9%) samples, defined as wild type by local laboratory assessment. Frequently mutated genes were: TP53 (39.6%), KRAS exons 3/4 (8.8%), NRAS exons 2/3 (7.1%), PIK3CA exons 9/20 (13.2%), BRAF (8.2%). FOLFIRI plus cetuximab treatment determined ORR of 62.0% (95% CI 55.5% to 74.6%) with mPFS of 11.1 (95% CI 9.2-12.8) months in patients with KRAS and NRAS wild-type tumors. Conversely, ORR was 46.6% (95% CI 39.9-57.5%) with mPFS of 8.9 (95% CI 7.4-9.6) months in patients with KRAS or NRAS mutations. Similarly, the subgroup of patients carrying KRAS, NRAS, BRAF, or PIK3CA mutations showed a worse outcome, although this might be due to a prognostic effect.
Conclusions:
This study demonstrates that NGS analysis in mCRC is feasible, reveals high level of intra and intertumor heterogeneity, and identifies patients that might benefit of FOLFIRI plus cetuximab treatment.
Insights
Next-generation sequencing (NGS) is feasible for metastatic colorectal cancer (mCRC) patients, identifying gene mutations that predict benefit from FOLFIRI plus cetuximab treatment.
Area of Science:
- Oncology
- Genomics
- Molecular Diagnostics
Background:
- Antiepidermal growth factor receptor (anti-EGFR) antibody treatment is limited to metastatic colorectal cancer (mCRC) patients with RAS wild-type tumors.
- Next-generation sequencing (NGS) offers comprehensive assessment of gene alterations, potentially providing predictive and prognostic information.
Purpose of the Study:
- To evaluate the feasibility and utility of NGS in mCRC patients treated with FOLFIRI plus cetuximab.
- To identify gene mutations associated with treatment response and outcomes.
Main Methods:
- The CAPRI-GOIM trial enrolled 340 KRAS exon 2 wild-type mCRC patients receiving first-line FOLFIRI plus cetuximab.
- Tumor samples from 182 patients underwent NGS to analyze mutations in 22 colon cancer-related genes.
Main Results:
- NGS identified mutations in 68.1% of tumors across 14 genes, including TP53, KRAS, NRAS, PIK3CA, and BRAF.
- Patients with KRAS/NRAS wild-type tumors showed higher objective response rates (ORR) and longer progression-free survival (PFS) compared to those with mutations.
- KRAS exon 2 mutations were found in 15.9% of samples initially classified as wild-type.
Conclusions:
- NGS analysis is feasible in mCRC and reveals significant intra- and inter-tumor heterogeneity.
- NGS can identify patients likely to benefit from FOLFIRI plus cetuximab therapy.
- The study highlights the importance of comprehensive genomic profiling beyond KRAS exon 2 for guiding anti-EGFR therapy.
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