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Sampling is a technique to select a portion (or subset) of the larger population and study that portion (the sample) to gain information about the population. Data are the result of sampling from a population. The sampling method ensures that samples are drawn without bias and accurately represent the population. Because measuring the entire population in a study is not practical, researchers use samples to represent the population of interest. Among the various sampling methods used by...
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Automated Factor Slice Sampling.

Matthew M Tibbits1, Chris Groendyke2, Murali Haran1

  • 1Department of Statistics, Pennsylvania State University.

Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America
|June 24, 2014
PubMed
Summary
This summary is machine-generated.

We introduce an automated Markov chain Monte Carlo (MCMC) method using a factor slice sampler. This approach simplifies creating efficient samplers for complex distributions, saving time and effort.

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Area of Science:

  • Statistics
  • Computational Statistics
  • Machine Learning

Background:

  • Markov chain Monte Carlo (MCMC) methods are versatile for sampling complex probability distributions.
  • Designing efficient MCMC samplers, especially for high-dimensional problems with variable dependencies, is challenging and time-consuming.
  • Current MCMC approaches often require manual tuning, limiting their general applicability and efficiency.

Purpose of the Study:

  • To develop an automated and efficient Markov chain Monte Carlo (MCMC) algorithm.
  • To introduce the factor slice sampler, a novel generalization of the univariate slice sampler.
  • To create a robust tuning approach for MCMC algorithms, applicable to both standard and factor slice samplers.

Main Methods:

  • Proposed the "factor slice sampler," which generalizes the univariate slice sampler by incorporating the selection of a coordinate basis (factors) as a tunable parameter.
  • Developed an automated approach for selecting tuning parameters to construct efficient factor slice samplers.
  • Applied the automated tuning strategy to standard univariate slice samplers as well.

Main Results:

  • Demonstrated the efficiency and broad applicability of the automated MCMC algorithm through various examples.
  • The factor slice sampler and automated tuning approach significantly reduce the effort required for MCMC algorithm design.
  • The proposed methods are effective even for multivariate distributions with strong variable dependencies.

Conclusions:

  • The automated factor slice sampler provides a general and efficient solution for sampling complex distributions.
  • This approach streamlines MCMC algorithm development, making it more accessible and less labor-intensive.
  • The automated tuning strategy enhances the performance of both novel and existing MCMC samplers.