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Updated: Apr 27, 2026

In Vivo Alkaline Comet Assay and Enzyme-modified Alkaline Comet Assay for Measuring DNA Strand Breaks and Oxidative DNA Damage in Rat Liver
Published on: May 4, 2016
In vitro/in vivo screening of oxidative homeostasis and damage to DNA, protein, and lipids using UPLC/MS-MS
Aitor Carretero1, Zacarías León, Juan Carlos García-Cañaveras
1Unidad de Hepatología Experimental, Instituto de Investigación Sanitaria - Fundación Hospital La Fe, CIBERehd, Centro de Investigaciones Biomédicas en Red de Enfermedades Hepáticas y Digestivas, FIS, 46026, Valencia, Spain.
Abstract:
Multiple analytical methods are required to comprehensively assess oxidative homeostasis and specific damage to macromolecules. Our aim was to develop a straightforward strategy for the fast assessment of global oxidative status and specific damage to DNA, proteins, and lipids. To this end, an analytical method, based on ultra-performance liquid chromatography coupled to mass spectrometry (UPLC-MS/MS), was developed and validated for the quantification of 16 oxidative stress (OS) biomarkers. Some of these markers were unstable; thus, an easy sample treatment procedure, including fractionation and derivatization, was set up. The method was validated according to Food and Drug Administration (FDA) guidelines, and it provided good results in terms of intra- and inter-day precision (≤17.2 and 16 %, respectively), accuracy (relative error measurement between -16.6 and 19.8 %), and linearity (R (2) > 0.994). The approach was applied to determine the oxidative insult provoked to cultured rat hepatocytes by cumene hydroperoxide and to analyze the liver and serum samples from patients diagnosed with nonalcoholic steatohepatitis. In both studies, significant differences were found if compared to the corresponding control groups; interestingly, ophthalmic acid was shown as an OS biomarker in both models for the first time. A key advantage of the novel approach in comparison with former multi-method approaches is that now a single method is applied to assess the 16 OS biomarkers. Its comprehensive capacity to profile oxidative homeostasis and damage in both in vitro and clinical samples has been illustrated, which indicates that the proposed approach is a good choice to evaluate whether OS is involved in physiological signals, diseases, or toxic events and to what extent.
Insights
A new UPLC-MS/MS method quantifies 16 oxidative stress biomarkers for assessing cellular damage. This approach efficiently measures oxidative homeostasis in both lab and patient samples, identifying ophthalmic acid as a novel biomarker.
Area of Science:
- Biochemistry
- Analytical Chemistry
- Biomarker Discovery
Background:
- Assessing oxidative homeostasis and macromolecular damage requires multiple analytical methods.
- A need exists for a streamlined approach to quantify global oxidative status and specific damage to DNA, proteins, and lipids.
Purpose of the Study:
- To develop a straightforward, fast analytical strategy for assessing oxidative stress (OS) biomarkers.
- To quantify 16 OS biomarkers using a single, validated method.
Main Methods:
- Ultra-performance liquid chromatography coupled to tandem mass spectrometry (UPLC-MS/MS).
- Sample treatment involving fractionation and derivatization for unstable markers.
- Validation according to Food and Drug Administration (FDA) guidelines.
Main Results:
- The UPLC-MS/MS method quantified 16 OS biomarkers with good precision, accuracy, and linearity.
- The method successfully assessed oxidative insult in cultured rat hepatocytes and in liver/serum samples from nonalcoholic steatohepatitis patients.
- Ophthalmic acid was identified as an OS biomarker in both experimental models for the first time.
Conclusions:
- A single UPLC-MS/MS method can comprehensively assess 16 OS biomarkers, simplifying multi-method approaches.
- The validated method is suitable for profiling oxidative homeostasis and damage in both in vitro and clinical samples.
- This approach aids in evaluating the extent of OS involvement in physiological signals, diseases, and toxic events.
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