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Published on: April 26, 2019
The RimL transacetylase provides resistance to translation inhibitor microcin C
Teymur Kazakov1, Konstantin Kuznedelov1, Ekaterina Semenova1
1Waksman Institute, Piscataway, New Jersey, USA.
Abstract:
Peptide-nucleotide antibiotic microcin C (McC) is produced by some Escherichia coli strains. Inside a sensitive cell, McC is processed, releasing a nonhydrolyzable analog of aspartyl-adenylate, which inhibits aspartyl-tRNA synthetase. The product of mccE, a gene from the plasmid-borne McC biosynthetic cluster, acetylates processed McC, converting it into a nontoxic compound. MccE is homologous to chromosomally encoded acetyltransferases RimI, RimJ, and RimL, which acetylate, correspondingly, the N termini of ribosomal proteins S18, S5, and L12. Here, we show that E. coli RimL, but not other Rim acetyltransferases, provides a basal level of resistance to McC and various toxic nonhydrolyzable aminoacyl adenylates. RimL acts by acetylating processed McC, which along with ribosomal protein L12 should be considered a natural RimL substrate. When overproduced, RimL also makes cells resistant to albomycin, an antibiotic that upon intracellular processing gives rise to a seryl-thioribosyl pyrimidine that targets seryl-tRNA synthetase. We further show that E. coli YhhY, a protein related to Rim acetyltransferases but without a known function, is also able to detoxify several nonhydrolyzable aminoacyl adenylates but not processed McC. We propose that RimL and YhhY protect bacteria from various toxic aminoacyl nucleotides, either exogenous or those generated inside the cell during normal metabolism.
Insights
Escherichia coli RimL acetyltransferase provides resistance to microcin C (McC) and toxic aminoacyl adenylates by acetylating processed McC. This study identifies RimL and YhhY proteins as key players in bacterial defense against harmful nucleotides.
Area of Science:
- Microbiology
- Molecular Biology
- Biochemistry
Background:
- Microcin C (McC) is a peptide-nucleotide antibiotic produced by Escherichia coli.
- Processed McC releases a toxic aspartyl-adenylate analog inhibiting aspartyl-tRNA synthetase.
- The mccE gene product acetylates processed McC, conferring nontoxicity.
Purpose of the Study:
- To investigate the role of E. coli acetyltransferases, specifically RimL, in resistance to McC and related toxic compounds.
- To identify novel bacterial defense mechanisms against aminoacyl adenylates.
Main Methods:
- Comparative analysis of acetyltransferase activity (RimI, RimJ, RimL, YhhY) against processed McC and toxic aminoacyl adenylates.
- Assessment of antibiotic resistance in E. coli strains with altered expression of RimL and YhhY.
- Identification of natural substrates for RimL.
Main Results:
- E. coli RimL confers resistance to McC and toxic nonhydrolyzable aminoacyl adenylates by acetylating processed McC.
- Ribosomal protein L12 is identified as a natural substrate for RimL, alongside processed McC.
- Overproduced RimL also confers resistance to albomycin, an antibiotic targeting seryl-tRNA synthetase.
- E. coli YhhY detoxifies aminoacyl adenylates but not processed McC.
Conclusions:
- RimL and YhhY are crucial for bacterial defense against toxic aminoacyl nucleotides, both exogenous and endogenous.
- RimL's acetylation activity extends beyond ribosomal proteins to include processed McC, highlighting its broader protective role.
- The study reveals a novel detoxification pathway involving RimL and YhhY, expanding our understanding of bacterial antibiotic resistance.
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