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Updated: Apr 27, 2026

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
Assessing age-related gray matter decline with voxel-based morphometry depends significantly on segmentation and
Dorothée V Callaert1, Annemie Ribbens2, Frederik Maes2
1Movement Control and Neuroplasticity Research Group, Department of Kinesiology KU Leuven, Belgium ; CNRS, INCIA, UMR 5287, University of Bordeaux Talence, France.
Different brain imaging analysis methods show varying results for age-related gray matter decline. Algorithms with limited deformation flexibility may overestimate differences in VBM studies.
Area of Science:
- Neuroimaging
- Brain Aging Research
- Computational Anatomy
Background:
- Healthy aging involves progressive gray matter (GM) decline across the brain.
- Manual region of interest (ROI) volumetry was the traditional method for assessing GM degeneration.
- Voxel-Based Morphometry (VBM) offers automated analysis but depends on accurate image segmentation and normalization.
Purpose of the Study:
- To compare volumetric measurements of age-related GM decline using different VBM algorithms.
- To assess the impact of segmentation and normalization methods on VBM results.
- To evaluate differences between VBM and atlas-based ROI approaches.
Main Methods:
- Compared SPM5/SPM8 unified segmentation/normalization, DARTEL (SPM8), and FSL tools (FAST, FNIRT).
- Utilized an atlas-based ROI approach for volumetric analysis.
- Analyzed brain gray matter changes in young (mean age 23) and elderly (mean age 66) subjects.
Main Results:
- Significant differences in volumetric measurements were observed between methods.
- SPM5/SPM8 showed the largest age-related GM differences; DARTEL showed the smallest.
- Method-specific differences were most pronounced in cortical areas near major sulci.
Conclusions:
- Algorithms with limited local deformation flexibility (e.g., SPM5/SPM8 unified segmentation) may overestimate group differences in VBM.
- Flexible warping methods (e.g., DARTEL, FSL) provide more conservative estimates.
- Findings are crucial for comparing VBM results across studies using different methodologies, especially when group anatomy deviates from templates.
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