Related Experiment Video
Updated: Apr 27, 2026

Assessing Cellular Target Engagement by SHP2 PTPN11 Phosphatase Inhibitors
Published on: July 17, 2020
Therapeutic potential of targeting the oncogenic SHP2 phosphatase
Li-Fan Zeng1, Ruo-Yu Zhang, Zhi-Hong Yu
1Department of Biochemistry and Molecular Biology, ‡Herman B. Wells Center for Pediatric Research, and §Chemical Genomics Core Facility, Indiana University School of Medicine , 635 Barnhill Drive, Indianapolis, Indiana 46202 United States.
Abstract:
The Src homology 2 domain containing protein tyrosine phosphatase-2 (SHP2) is an oncogenic phosphatase associated with various kinds of leukemia and solid tumors. Thus, there is substantial interest in developing SHP2 inhibitors as potential anticancer and antileukemia agents. Using a structure-guided and fragment-based library approach, we identified a novel hydroxyindole carboxylic acid-based SHP2 inhibitor 11a-1, with an IC50 value of 200 nM and greater than 5-fold selectivity against 20 mammalian PTPs. Structural and modeling studies reveal that the hydroxyindole carboxylic acid anchors the inhibitor to the SHP2 active site, while interactions of the oxalamide linker and the phenylthiophene tail with residues in the β5-β6 loop contribute to 11a-1's binding potency and selectivity. Evidence suggests that 11a-1 specifically attenuates the SHP2-dependent signaling inside the cell. Moreover, 11a-1 blocks growth factor mediated Erk1/2 and Akt activation and exhibits excellent antiproliferative activity in lung cancer and breast cancer as well as leukemia cell lines.
Insights
Researchers developed a novel SHP2 inhibitor, 11a-1, showing potent and selective anticancer activity. This compound blocks key cancer cell signaling pathways, offering promise for leukemia and solid tumor treatments.
Area of Science:
- Biochemistry
- Medicinal Chemistry
- Oncology
Background:
- The Src homology 2 domain containing protein tyrosine phosphatase-2 (SHP2) is a key oncogenic phosphatase implicated in various cancers.
- Developing selective SHP2 inhibitors is crucial for anticancer and antileukemia therapies.
Purpose of the Study:
- To identify and characterize novel SHP2 inhibitors with potential therapeutic applications.
- To investigate the binding mechanism and cellular effects of a newly discovered inhibitor.
Main Methods:
- Structure-guided and fragment-based drug discovery approach.
- Biochemical assays to determine inhibitory concentration (IC50) and selectivity against other protein tyrosine phosphatases (PTPs).
- Cellular assays to assess inhibition of SHP2-dependent signaling pathways and antiproliferative activity.
Main Results:
- A novel hydroxyindole carboxylic acid-based inhibitor, 11a-1, was identified with an IC50 of 200 nM.
- 11a-1 demonstrated >5-fold selectivity against 20 mammalian PTPs.
- Structural studies revealed specific binding interactions within the SHP2 active site and β5-β6 loop.
- 11a-1 effectively attenuated SHP2-dependent signaling, blocked growth factor-mediated Erk1/2 and Akt activation, and showed antiproliferative activity in lung cancer, breast cancer, and leukemia cell lines.
Conclusions:
- The novel inhibitor 11a-1 exhibits potent and selective inhibition of SHP2.
- 11a-1 targets key cancer signaling pathways, demonstrating significant antiproliferative effects in preclinical cancer models.
- This hydroxyindole carboxylic acid derivative represents a promising lead compound for developing new anticancer and antileukemia drugs.
Related Concept Videos
The JAK-STAT Signaling Pathway
Targeted Cancer Therapies
There are several types of targeted therapies against...
Abnormal Proliferation
Protein Kinases and Phosphatases
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
PI3K/mTOR/AKT Signaling Pathway
Mitogens and the Cell Cycle

