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Updated: Apr 27, 2026

Sequencing Small Non-coding RNA from Formalin-fixed Tissues and Serum-derived Exosomes from Castration-resistant Prostate Cancer Patients
Published on: November 19, 2019
Androgen receptor and its splice variant, AR-V7, differentially regulate FOXA1 sensitive genes in LNCaP prostate
William C Krause1, Ayesha A Shafi1, Manjula Nakka1
1Department of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Abstract:
Prostate cancer (PCa) is an androgen-dependent disease, and tumors that are resistant to androgen ablation therapy often remain androgen receptor (AR) dependent. Among the contributors to castration-resistant PCa are AR splice variants that lack the ligand-binding domain (LBD). Instead, they have small amounts of unique sequence derived from cryptic exons or from out of frame translation. The AR-V7 (or AR3) variant is constitutively active and is expressed under conditions consistent with CRPC. AR-V7 is reported to regulate a transcriptional program that is similar but not identical to that of AR. However, it is unknown whether these differences are due to the unique sequence in AR-V7, or simply to loss of the LBD. To examine transcriptional regulation by AR-V7, we have used lentiviruses encoding AR-V7 (amino acids 1-627 of AR with the 16 amino acids unique to the variant) to prepare a derivative of the androgen-dependent LNCaP cells with inducible expression of AR-V7. An additional cell line was generated with regulated expression of AR-NTD (amino acids 1-660 of AR); this mutant lacks the LBD but does not have the AR-V7 specific sequence. We find that AR and AR-V7 have distinct activities on target genes that are co-regulated by FOXA1. Transcripts regulated by AR-V7 were similarly regulated by AR-NTD, indicating that loss of the LBD is sufficient for the observed differences. Differential regulation of target genes correlates with preferential recruitment of AR or AR-V7 to specific cis-regulatory DNA sequences providing an explanation for some of the observed differences in target gene regulation.
Insights
Prostate cancer tumors often remain androgen receptor (AR) dependent, even when resistant to treatment. AR splice variants lacking the ligand-binding domain (LBD) drive this, with AR-V7 being a key player in castration-resistant prostate cancer.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Prostate cancer (PCa) is typically androgen-dependent.
- Castration-resistant PCa (CRPC) often remains androgen receptor (AR) dependent.
- AR splice variants lacking the ligand-binding domain (LBD) contribute to CRPC, with AR-V7 being a notable example.
Purpose of the Study:
- To investigate the distinct transcriptional regulation by AR-V7 compared to full-length AR.
- To determine if the unique sequence of AR-V7 or the absence of the LBD accounts for its activity.
- To elucidate the mechanisms behind differential gene regulation by AR variants.
Main Methods:
- Generated cell lines with inducible expression of AR-V7 and AR-NTD (lacking LBD) using lentiviruses.
- Compared transcriptional programs regulated by full-length AR, AR-V7, and AR-NTD.
- Analyzed differential recruitment of AR variants to cis-regulatory DNA sequences.
Main Results:
- AR-V7 and full-length AR exhibit distinct activities on target genes co-regulated by FOXA1.
- Transcripts regulated by AR-V7 were similarly regulated by AR-NTD, indicating LBD loss is sufficient for observed differences.
- Differential gene regulation correlates with preferential recruitment of AR or AR-V7 to specific DNA sequences.
Conclusions:
- The absence of the LBD in AR variants like AR-V7 is sufficient to explain differences in transcriptional activity compared to full-length AR.
- Preferential recruitment to specific DNA sequences underlies the distinct regulatory roles of AR and AR-V7.
- Understanding these mechanisms provides insights into castration-resistant prostate cancer progression.
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