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Updated: Apr 27, 2026

Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Role of PTCH1 gene methylation in gastric carcinogenesis
Yun Zuo1, Yu Song1, Min Zhang1
1Department of Oncology, The First Hospital of Zhangjiagang, Zhangjiagang, Jiangsu 215600, P.R. China.
Abstract:
The present study aimed to investigate the role of PTCH1 methylation in gastric carcinogenesis and the therapeutic effect of the methylation inhibitor, 5-aza-2'-deoxycytidine (5-aza-dC), in the treatment of gastric cancer. Total RNA was extracted from 20 gastric cancer tissues, their corresponding adjacent normal tissues and a gastric cancer AGS cell line. PTCH1 mRNA expression was detected by quantitative PCR, and the PTCH1 methylation of the promoter was examined by methylation-specific PCR. The AGS cells were treated with 5-Aza-dC; apoptosis and the cell cycle were examined by flow cytometry, and the PTCH1 methylation level was observed. PTCH1 expression was negatively correlated with promoter methylation in the gastric cancer tissues, their corresponding adjacent normal tissues and the gastric cancer AGS cell line (r=-0.591, P=0.006). 5-Aza-dC treatment caused apoptosis and the G0/G1 phase arrest of the AGS cells, and also induced the demethylation and increased expression of PTCH1. In conclusion, the study found that the hypermethylation of the PTCH1 gene promoter region is one of the main causes of low PTCH1 expression in AGS cells. Demethylation agent 5-Aza-dC can reverse the methylation status of PTCH1 and regulate the expression of PTCH1, indicating its potential role in gastric cancer treatment.
Insights
Gastric cancer involves PTCH1 gene promoter hypermethylation, reducing PTCH1 expression. The demethylation agent 5-aza-2'-deoxycytidine (5-aza-dC) can reverse this methylation, increasing PTCH1 expression and potentially treating gastric cancer.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- PTCH1 (Patched 1) is a tumor suppressor gene.
- Aberrant methylation of PTCH1 promoter is implicated in various cancers.
- Gastric cancer pathogenesis involves epigenetic alterations.
Purpose of the Study:
- To investigate the role of PTCH1 promoter methylation in gastric carcinogenesis.
- To evaluate the therapeutic potential of 5-aza-2 -deoxycytidine (5-aza-dC) in gastric cancer treatment by targeting PTCH1 methylation.
Main Methods:
- Quantitative PCR for PTCH1 mRNA expression.
- Methylation-specific PCR for PTCH1 promoter methylation analysis.
- Flow cytometry to assess apoptosis and cell cycle.
- Treatment of gastric cancer AGS cell line with 5-aza-dC.
Main Results:
- PTCH1 expression was negatively correlated with promoter methylation in gastric tissues and AGS cells (r=-0.591, P=0.006).
- 5-aza-dC treatment induced apoptosis and G0/G1 phase arrest in AGS cells.
- 5-aza-dC treatment led to PTCH1 demethylation and increased PTCH1 expression.
Conclusions:
- PTCH1 gene promoter hypermethylation is a key factor in reduced PTCH1 expression in gastric cancer.
- 5-aza-dC effectively reverses PTCH1 methylation and regulates its expression.
- Targeting PTCH1 methylation with agents like 5-aza-dC shows promise for gastric cancer therapy.
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