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Published on: December 19, 2020
Robust Radiomics feature quantification using semiautomatic volumetric segmentation.
Chintan Parmar1, Emmanuel Rios Velazquez2, Ralph Leijenaar3
1Department of Radiation Oncology, Dana-Farber Cancer Institute, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America; Department of Radiation Oncology (MAASTRO), Maastricht University, Maastricht, The Netherlands; Machine Intelligence Unit, Indian Statistical Institute, Kolkata, India.
Radiomics research benefits from 3D-Slicer for tumor segmentation. This semi-automatic method enhances reproducibility and robustness of quantitative imaging features compared to manual delineations, improving radiomic analysis.
Area of Science:
- Medical Imaging Analysis
- Radiomics
- Quantitative Imaging
Background:
- Advances in medical imaging allow tumor phenotype quantification.
- Radiomics converts images into data by extracting quantitative features.
- Tumor segmentation is a key challenge in Radiomics, with manual methods being time-consuming and variable.
Purpose of the Study:
- To investigate the robustness of a semi-automatic region growing volumetric segmentation algorithm in 3D-Slicer for quantitative imaging feature extraction.
- To compare the reproducibility and robustness of radiomic features extracted from 3D-Slicer segmentations versus manual delineations.
Main Methods:
- A semi-automatic region growing volumetric segmentation algorithm in 3D-Slicer was used.
- Fifty-six 3D-radiomic features were extracted from CT images of 20 lung cancer patients.
- Features were derived from 3D-tumor volumes segmented by observers using 3D-Slicer and compared to manual slice-by-slice delineations.
Main Results:
- Radiomic features from 3D-Slicer segmentations showed significantly higher reproducibility (ICC = 0.85 ± 0.15) than manual segmentations (ICC = 0.77 ± 0.17).
- Features extracted using 3D-Slicer were more robust, exhibiting a significantly smaller range across observers.
- 3D-Slicer segmentations demonstrated better overlap with manual contouring feature ranges.
Conclusions:
- 3D-Slicer segmented tumor volumes offer a superior alternative to manual delineation for radiomic feature quantification.
- The use of 3D-Slicer leads to more reproducible and robust imaging descriptors.
- 3D-Slicer is suitable for quantitative image feature extraction and data mining in large patient cohorts.
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