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Robust Radiomics feature quantification using semiautomatic volumetric segmentation.

Chintan Parmar1, Emmanuel Rios Velazquez2, Ralph Leijenaar3

  • 1Department of Radiation Oncology, Dana-Farber Cancer Institute, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, United States of America; Department of Radiation Oncology (MAASTRO), Maastricht University, Maastricht, The Netherlands; Machine Intelligence Unit, Indian Statistical Institute, Kolkata, India.

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Summary
This summary is machine-generated.

Radiomics research benefits from 3D-Slicer for tumor segmentation. This semi-automatic method enhances reproducibility and robustness of quantitative imaging features compared to manual delineations, improving radiomic analysis.

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Area of Science:

  • Medical Imaging Analysis
  • Radiomics
  • Quantitative Imaging

Background:

  • Advances in medical imaging allow tumor phenotype quantification.
  • Radiomics converts images into data by extracting quantitative features.
  • Tumor segmentation is a key challenge in Radiomics, with manual methods being time-consuming and variable.

Purpose of the Study:

  • To investigate the robustness of a semi-automatic region growing volumetric segmentation algorithm in 3D-Slicer for quantitative imaging feature extraction.
  • To compare the reproducibility and robustness of radiomic features extracted from 3D-Slicer segmentations versus manual delineations.

Main Methods:

  • A semi-automatic region growing volumetric segmentation algorithm in 3D-Slicer was used.
  • Fifty-six 3D-radiomic features were extracted from CT images of 20 lung cancer patients.
  • Features were derived from 3D-tumor volumes segmented by observers using 3D-Slicer and compared to manual slice-by-slice delineations.

Main Results:

  • Radiomic features from 3D-Slicer segmentations showed significantly higher reproducibility (ICC = 0.85 ± 0.15) than manual segmentations (ICC = 0.77 ± 0.17).
  • Features extracted using 3D-Slicer were more robust, exhibiting a significantly smaller range across observers.
  • 3D-Slicer segmentations demonstrated better overlap with manual contouring feature ranges.

Conclusions:

  • 3D-Slicer segmented tumor volumes offer a superior alternative to manual delineation for radiomic feature quantification.
  • The use of 3D-Slicer leads to more reproducible and robust imaging descriptors.
  • 3D-Slicer is suitable for quantitative image feature extraction and data mining in large patient cohorts.