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Decoding the EGFR mutation-induced drug resistance in lung cancer treatment by local surface geometric properties
Lichun Ma1, Debby D Wang1, Yiqing Huang2
1Department of Electronic Engineering, City University of Hong Kong, Kowloon, Hong Kong, China.
Abstract:
Epidermal growth factor receptor (EGFR) mutation-induced drug resistance leads to a limited efficacy of tyrosine kinase inhibitors during lung cancer treatments. In this study, we explore the correlations between the local surface geometric properties of EGFR mutants and the progression-free survival (PFS). The geometric properties include local surface changes (four types) of the EGFR mutants compared with the wild-type EGFR, and the convex degrees of these local surfaces. Our analysis results show that the Spearman׳s rank correlation coefficients between the PFS and three types of local surface properties are all greater than 0.6 with small P-values, implying a high significance. Moreover, the number of atoms with solid angles in the ranges of [0.71, 1], [0.61, 1] or [0.5, 1], indicating the convex degree of a local EGFR surface, also shows a strong correlation with the PFS. Overall, these characteristics can be efficiently applied to the prediction of drug resistance in lung cancer treatments, and easily extended to other cancer treatments.
Insights
Local surface geometry of epidermal growth factor receptor (EGFR) mutants correlates with progression-free survival in lung cancer. These findings aid in predicting drug resistance for tyrosine kinase inhibitor therapies.
Area of Science:
- Oncology
- Structural Biology
- Computational Chemistry
Background:
- Drug resistance in lung cancer limits tyrosine kinase inhibitor (TKI) efficacy.
- Epidermal growth factor receptor (EGFR) mutations are a key driver of resistance.
- Predictive biomarkers for TKI resistance are crucial for effective lung cancer treatment.
Purpose of the Study:
- To investigate the correlation between local surface geometric properties of EGFR mutants and progression-free survival (PFS).
- To identify geometric features that predict drug resistance in EGFR-mutated lung cancer.
Main Methods:
- Comparative analysis of local surface geometry between wild-type EGFR and EGFR mutants.
- Quantification of four types of local surface changes and surface convexity.
- Statistical analysis using Spearman's rank correlation to assess PFS association.
Main Results:
- Three types of local surface properties showed significant positive correlations (Spearman's rho > 0.6, P < 0.05) with PFS.
- The number of atoms within specific solid angle ranges, indicating surface convexity, strongly correlated with PFS.
- These geometric characteristics serve as potential predictors of TKI resistance.
Conclusions:
- Local surface geometry of EGFR mutants is a significant predictor of PFS in lung cancer patients treated with TKIs.
- Geometric analysis of EGFR mutants offers a novel approach for predicting drug resistance.
- The findings can be extended to predict resistance in other cancer types.
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