Related Experiment Video
Updated: Apr 26, 2026

Synthesis of Wavelength-shifting DNA Hybridization Probes by Using Photostable Cyanine Dyes
Published on: July 6, 2016
Red and blue shifted hydridic bonds
1Department of Quantum Chemistry, Nicolaus Copernicus University, 7-Gagarina St., PL-87 100, Toruń, Poland.
Abstract:
By performing MP2/aug-cc-pVTZ ab initio calculations for a large set of dimer systems possessing a R-H hydridic bond involved in diverse types of intermolecular interactions (dihydrogen bonds, hydride halogen bonds, hydride hydrogen bonds, and charge-assisted hydride hydrogen bonds), we show that this is rather an elongation than a shortening that a hydride bond undergoes on interaction. Contrary to what might have been expected on the basis of studies in uniform electric field, this elongation is accompanied by a blue instead of red shift of the R-H stretching vibration frequency. We propose that the "additional" elongation of the R-H hydridic bond results from the significant charge outflow from the sigma bonding orbital of R-H that weakens this bond. The more standard red shift obtained for stronger complexes is explained by means of the Hermansson's formula and the particularly strong electric field produced by the H-acceptor molecule.
Related Concept Videos
Valence Bond Theory and Hybridized Orbitals
A σ bond (single bond in a Lewis structure) is a covalent bond in which the electron density is...
Hybridization of Atomic Orbitals I
Hybridization of Atomic Orbitals II
IR Absorption Frequency: Hybridization
Among the sp, sp2, and sp3 hybridized orbitals, sp orbitals have the maximum s character (50%). Consequently, the electrons are held more closely to the nucleus, resulting in stronger and shorter C–H bonds that...
Hybrid Zones
Aryldiazonium Salts to Azo Dyes: Diazo Coupling

