Related Experiment Video
Updated: Apr 26, 2026

10:56
Assays for the Degradation of Misfolded Proteins in Cells
Published on: August 28, 2016
11.7K
Environmental contaminants perturb fragile protein assemblies and inhibit normal protein function
Sarah H Lawrence1, Trevor Selwood1, Eileen K Jaffe1
1Developmental Therapeutics, Fox Chase Cancer Center 333 Cottman Avenue, Philadelphia, PA, 19111 (USA).
Current Chemical Biology
|July 22, 2014
Summary
Environmental contaminants can disrupt human enzyme activity by stabilizing inactive protein forms. This study identified 17 compounds that inhibit porphobilinogen synthase (HsPBGS), potentially worsening diseases like lead poisoning and ALAD porphyria.
Area of Science:
- Biochemistry
- Toxicology
- Enzyme kinetics
Background:
- The molecular mechanisms of environmental contaminant toxicity are poorly understood.
- Human porphobilinogen synthase (HsPBGS) is crucial for heme biosynthesis and its activity is regulated by oligomeric state.
- Small molecules can inhibit HsPBGS by stabilizing its inactive hexameric form.
Purpose of the Study:
- To investigate if environmental contaminants from the National Toxicology Program library can stabilize the HsPBGS hexamer and inhibit its activity.
- To identify specific contaminants that perturb HsPBGS oligomeric distribution and function.
Main Methods:
- Screening of 1,408 compounds from the National Toxicology Program library using native polyacrylamide gel electrophoresis.
- Confirmation of preliminary hits and dose-response analysis of compounds affecting HsPBGS oligomeric distribution.
- In vitro assays to determine the inhibitory effects of identified compounds on HsPBGS catalytic activity.
Main Results:
- Seventeen compounds were identified that shift HsPBGS oligomeric distribution towards the hexamer and inhibit its activity.
- The most potent inhibitor, Mutagen X, was characterized with an IC50 of 1.4 μM.
- These findings demonstrate that environmental contaminants can act as allosteric inhibitors of HsPBGS.
Conclusions:
- Environmental contaminants can inhibit HsPBGS by stabilizing its inactive hexameric form, representing a novel toxicity mechanism.
- The identified inhibitors may exacerbate conditions associated with PBGS dysfunction, such as ALAD porphyria and lead poisoning.
- Perturbation of protein oligomeric equilibria by small molecules is a viable mechanism for environmental toxicity.
More Related Videos
Related Concept Videos
Protein Denaturation
8.8K
The function of proteins depends on their native three-dimensional structure, which is dictated by the amino acid sequence of the specific protein. Folding of the polypeptide chain takes place under specific conditions that energetically favor the folded conformation. In contrast, protein denaturation occurs spontaneously under unfavorable conditions that disrupt the integrity of the folded conformation. Thus, the chemical and physical environment of a protein, such as significant changes in pH...
8.8K
The Proteasome
1.6K
Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
1.6K
The Proteasome
7.7K
Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
7.7K
Amyloid Fibrils
10.1K
Amyloid fibrils are aggregates of misfolded proteins. Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils.
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining,...
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining,...
10.1K
The Unfolded Protein Response
5.6K
The ER is the hub of protein synthesis in a cell. It has robust systems to quality control protein folding and also for degradation of terminally misfolded proteins. Under normal conditions, a small proportion of misfolded proteins that cannot be salvaged need to be transported to the cytoplasm by the ER-associated degradation or ERAD pathways. However, if the ERAD cannot handle the misfolded proteins, the cell activates the unfolded protein response or UPR to adjust the protein folding...
5.6K
Proteins: From Genes to Degradation
11.9K
Within a biological system, the DNA encodes the RNA, and the nucleotide sequence in the RNA further defines the amino acid sequence in the protein. This is referred to as “The Central Dogma of Molecular Biology” - a term coined by Francis Crick. Central dogma is a firm principle in biology that defines the flow of genetic information within any life form. The two fundamental steps in central dogma are - transcription and translation.
Transcription is the synthesis of RNA...
Transcription is the synthesis of RNA...
11.9K

