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Updated: Apr 26, 2026

Author Spotlight: Deciphering the Role of ATM in Ataxia-Telangiectasia and the Associated Cerebellar Degeneration
Published on: December 27, 2024
DNA double-strand breaks activate ATM independent of mitochondrial dysfunction in A549 cells
Lidza Kalifa1, Jennifer S Gewandter2, Rhonda J Staversky3
1Department of Environmental Medicine, The University of Rochester, Rochester, NY 14642, USA.
Abstract:
Excessive nuclear or mitochondrial DNA damage can lead to mitochondrial dysfunction, decreased energy production, and increased generation of reactive oxygen species (ROS). Although numerous cell signaling pathways are activated when cells are injured, the ataxia telangiectasia mutant (ATM) protein has emerged as a major regulator of the response to both mitochondrial dysfunction and nuclear DNA double-strand breaks (DSBs). Because mitochondrial dysfunction is often a response to excessive DNA damage, it has been difficult to determine whether nuclear and/or mitochondrial DNA DSBs activate ATM independent of mitochondrial dysfunction. In this study, mitochondrial and nuclear DNA DSBs were generated in the A549 human lung adenocarcinoma cell line by infecting with retroviruses expressing the restriction endonuclease PstI fused to a mitochondrial targeting sequence (MTS) or nuclear localization sequence (NLS) and a hemagglutinin antigen epitope tag (HA). Expression of MTS-PstI-HA or NLS-PstI-HA activated the DNA damage response defined by phosphorylation of ATM, the tumor suppressor protein p53 (TP53), KRAB-associated protein (KAP)-1, and structural maintenance of chromosomes (SMC)-1. Phosphorylated ATM and SMC1 were detected in nuclear fractions, whereas phosphorylated TP53 and KAP1 were detected in both mitochondrial and nuclear fractions. PstI also enhanced expression of the cyclin-dependent kinase inhibitor p21 and inhibited cell growth. This response to DNA damage occurred in the absence of detectable mitochondrial dysfunction and excess production of ROS. These findings reveal that DNA DSBs are sufficient to activate ATM independent of mitochondrial dysfunction and suggest that the activated form of ATM and some of its substrates are restricted to the nuclear compartment, regardless of the site of DNA damage.
Insights
DNA double-strand breaks (DSBs) activate the ATM protein independently of mitochondrial dysfunction. This DNA damage response occurs in the nucleus, even when damage originates in mitochondria.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- Excessive DNA damage can cause mitochondrial dysfunction, reduced energy production, and increased reactive oxygen species (ROS).
- The ataxia telangiectasia mutant (ATM) protein is a key regulator of cellular responses to both DNA damage and mitochondrial dysfunction.
- Distinguishing ATM activation by DNA damage versus mitochondrial dysfunction has been challenging.
Purpose of the Study:
- To determine if nuclear and/or mitochondrial DNA double-strand breaks (DSBs) can activate ATM independently of mitochondrial dysfunction.
- To investigate the localization of activated ATM and its substrates following DNA damage at different cellular compartments.
Main Methods:
- Generated nuclear and mitochondrial DNA DSBs in A549 lung adenocarcinoma cells using retroviruses expressing PstI endonuclease fused to nuclear localization sequence (NLS) or mitochondrial targeting sequence (MTS).
- Assessed DNA damage response by measuring phosphorylation of ATM, p53 (TP53), KAP1, and SMC1.
- Analyzed protein localization in nuclear and mitochondrial fractions and measured p21 expression and cell growth.
Main Results:
- Expression of MTS-PstI-HA and NLS-PstI-HA induced DNA damage response, including ATM phosphorylation, independent of detectable mitochondrial dysfunction or excess ROS.
- Phosphorylated ATM and SMC1 were primarily nuclear, while phosphorylated TP53 and KAP1 were found in both nuclear and mitochondrial fractions.
- PstI expression increased p21 levels and inhibited cell growth.
Conclusions:
- DNA double-strand breaks (DSBs) are sufficient to activate ATM independently of mitochondrial dysfunction.
- The activated ATM protein and some substrates appear to be restricted to the nuclear compartment, irrespective of the DNA damage site.
- This suggests a compartmentalized signaling response to DNA damage.
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