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Updated: Apr 26, 2026

Fecal Microbiota Transplantation via Colonoscopy for Recurrent C. difficile Infection
Published on: December 8, 2014
Intestinal microbiota transplantation, a simple and effective treatment for severe and refractory Clostridium
Hadeel Zainah1, Mona Hassan, Laila Shiekh-Sroujieh
1Department of Infectious Diseases, Henry Ford Health System, Detroit, MI, USA.
Background:
Restoring normal fecal flora through intestinal microbiota transplantation (IMT) was successful in curing recurrent Clostridium difficile infection (CDI). However, only a few cases have been reported of IMT being utilized for the treatment of severe or fulminant CDI.
Aim:
Is IMT a simple and effective treatment for severe and recurrent CDI?
Methods:
In this retrospective study, we report 14 patients with severe CDI refractory to conventional medical therapy, who underwent IMT. Fresh donor stool specimen was manually homogenized with warm tap water, filtered through gauze and then instilled through nasogastric tube (NGT). The primary outcome was clinical cure, defined as less than 3 loose bowel movements a day on day 7 after IMT and no need for further CDI therapy. The secondary outcomes were recurrence of CDI within 100 days of IMT and 30-day mortality after IMT. Descriptive statistics were done.
Results:
Fourteen patients with severe and refractory CDI received IMT. Mean age was 73.4 ± 11.9 years (range 52-92). IMT was given via NGT in 13 of the 14 patients. Eleven patients (79 %) achieved cure after IMT. No recurrence was seen in the patients who responded to IMT and were alive within the 100 day follow-up period. IMT was well tolerated. The 30-day all-cause mortality was 29 %, all 4 patients died as a result of their underlying cancer. No patients died as a result of CDI or IMT.
Conclusions:
IMT performed at the bedside via NGT is effective and safe for the treatment of severe and refractory CDI, and prevents recurrence.
Insights
Intestinal microbiota transplantation (IMT) is a safe and effective treatment for severe, recurrent Clostridium difficile infection (CDI). This method, administered via nasogastric tube (NGT), successfully cured 79% of patients and prevented CDI recurrence.
Area of Science:
- Gastroenterology
- Infectious Diseases
- Microbiome Research
Background:
- Recurrent Clostridium difficile infection (CDI) poses a significant challenge, often refractory to conventional therapies.
- Intestinal microbiota transplantation (IMT) has shown promise in restoring gut flora and treating CDI.
- Limited data exists on IMT for severe or fulminant CDI cases.
Purpose of the Study:
- To evaluate the efficacy and safety of IMT as a treatment for severe, refractory CDI.
- To assess IMT's impact on CDI recurrence and short-term mortality.
Main Methods:
- Retrospective analysis of 14 patients with severe CDI treated with IMT via nasogastric tube (NGT).
- Donor stool was homogenized, filtered, and instilled via NGT.
- Primary outcome: clinical cure (≤3 loose stools/day at day 7, no further CDI therapy).
- Secondary outcomes: CDI recurrence within 100 days, 30-day mortality.
Main Results:
- Eleven out of 14 patients (79%) achieved clinical cure after IMT.
- No recurrence was observed in responders within the 100-day follow-up.
- IMT was well-tolerated, with no CDI- or procedure-related deaths.
- 30-day all-cause mortality was 29%, attributed to underlying comorbidities (cancer).
Conclusions:
- Bedside IMT via NGT is an effective and safe therapeutic option for severe, refractory CDI.
- IMT demonstrates a significant clinical cure rate and prevents recurrence in CDI patients.
- The procedure is well-tolerated, with mortality linked to underlying conditions rather than CDI or IMT.
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