Related Experiment Video
Updated: Apr 26, 2026

10:41
Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms
Published on: May 9, 2017
9.9K
Symbiota - A virtual platform for creating voucher-based biodiversity information communities
Corinna Gries1, Edward E Gilbert2, Nico M Franz2
1University of Wisconsin, Madison, Madison, United States of America.
Biodiversity Data Journal
|July 25, 2014
Summary
Symbiota is a web-based platform for biodiversity data portals, enhancing collaboration and access to specimen records for researchers and students. It offers intuitive interfaces for data management and integration.
Area of Science:
- Biodiversity Informatics
- Computational Biology
- Data Science
Background:
- Natural history collections generate vast amounts of specimen and observation data.
- Mobilizing and integrating this data is crucial for biodiversity research and conservation.
- Existing platforms may lack the flexibility or accessibility needed for diverse collaborations.
Purpose of the Study:
- To review the Symbiota software platform for creating biodiversity information portals.
- To highlight its role in fostering regional and taxonomic collaborations.
- To assess its utility for mobilizing, integrating, and utilizing biodiversity data.
Main Methods:
- Symbiota is a web-based platform employing a novel data model and algorithms.
- It mirrors traditional flora/fauna structures for intuitive data organization.
- Functionality emulates Content Management Systems with sophisticated user interfaces.
Main Results:
- Symbiota portals have become significant resources in North America and beyond.
- The platform facilitates dynamic customization and meaningful data access for various user levels.
- It provides robust data exchange capabilities and promotes collaboration with other projects.
Conclusions:
- Symbiota effectively supports the creation of specialized biodiversity information portals.
- It enhances data accessibility and usability for a wide range of users.
- The platform occupies a valuable niche in biodiversity informatics by fostering collaboration and data integration.
Related Concept Videos
Biodiversity and Human Values
14.8K
Human civilization relies on biodiversity in many ways. Sudden changes in species biodiversity result in environmental changes that can modify weather patterns and therefore human civilizations.
14.8K
What is Biodiversity?
27.6K
Biodiversity describes the variety of living things at multiple organizational levels: genetic, species and ecosystem diversity. Species diversity includes all branches of the evolutionary tree from single-celled prokaryotic organisms, bacteria, and archaea, to the eukaryotic kingdoms: plants; animals; fungi; and protists. To date, there have been about 1.75 million species identified, and new species are discovered every week.
27.6K
Diversity of Protists II
2.3K
Alveolates are a group of organisms recognized by the presence of alveoli, which are cytoplasmic sacs located beneath the cell membrane. While their function remains uncertain, alveoli may help regulate water balance by controlling how much water enters and leaves the cell. In dinoflagellates, these structures may serve as armor plates. There are three major types of alveolates: ciliates, which move using cilia; dinoflagellates, which use flagella for movement; and apicomplexans, which are...
2.3K
Environmental Applications of Microorganisms
1.5K
Microorganisms play a pivotal role in maintaining ecosystem balance by recycling essential elements such as carbon, nitrogen, and phosphorus, as well as supporting processes like bioremediation, wastewater treatment, and biofuel production.Microbes in Elemental CyclesIn the carbon cycle, microorganisms decompose organic matter, releasing carbon dioxide via aerobic respiration. This carbon dioxide is subsequently used by photosynthetic organisms to synthesize organic compounds, closing the...
1.5K
Diversity of Protists III
2.1K
Rhizaria are a diverse group of unicellular protists characterized by their threadlike cytoplasmic extensions known as pseudopodia. These structures aid in both locomotion and feeding, giving Rhizaria an amoeboid appearance. Their amoeboid morphology once led to taxonomic confusion, but molecular phylogenetics has clarified their evolutionary placement and emphasized their shared use of pseudopodia despite divergent lineages.This clade comprises diverse lineages such as Chlorarachniophyta,...
2.1K
Diversity of Protists I
2.3K
Excavata is a diverse group of protists that includes both chemoorganotrophic and phototrophic species, with some thriving in anaerobic environments. Among the key groups within Excavata are diplomonads and parabasalids, which are flagellated protists that lack mitochondria and chloroplasts. These microorganisms typically inhabit anoxic environments, such as the intestines of animals, where they exist either symbiotically or as parasites, relying on fermentation for energy production. Some...
2.3K

