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Updated: Apr 26, 2026

Detecting the Ligand-binding Domain Dimerization Activity of Estrogen Receptor Alpha Using the Mammalian Two-Hybrid Assay
Published on: December 19, 2018
Structural insights into selective agonist actions of tamoxifen on human estrogen receptor alpha
Sandipan Chakraborty1, Pradip Kumar Biswas
1Laboratory of Computational Biophysics & Bioengineering, Department of Physics, Tougaloo College, Tougaloo, MS 39174, USA.
Abstract:
Tamoxifen-an anti-estrogenic ligand in breast tissues used as a first-line treatment in estrogen receptor (ER)-positive breast cancers-is associated with the development of resistance followed by resumption of tumor growth in about 30 % of cases. Whether tamoxifen assists in proliferation in such cases or whether any ligand-independent pathway to transcription exists is not fully understood; also, no ERα mutants have been detected so far that could lead to tamoxifen resistance. Using in silico conformational analysis of the ERα ligand binding domain (LBD), in the absence and presence of selective agonist (diethylstilbestrol; DES), antagonist (Faslodex; ICI), and selective estrogen receptor modulator (SERM; 4-hydroxy tamoxifen; 4-OHT) ligands, we have elucidated ligand-responsive structural modulations of the ERα-LBD dimer in its agonist and antagonist complexes to address the issue of "tamoxifen resistance". DES and ICI were found to stabilize the dimer in their agonist and antagonist conformations, respectively. The ERα-LBD dimer without the presence of any bound ligand also led to a stable structure in agonist conformation. However, binding of 4-OHT to the antagonist structure led to a flexible conformation allowing the protein to visit conformations populated by agonists as was evident from principal component analysis and radius of gyration plots. Further, the relaxed conformations of the 4-OHT bound protein exhibited a diminished size of the co-repressor binding pocket in the LBD, thus signaling a partial blockage of the co-repressor binding motif. Thus, the ability of 4-OHT-bound ERα-LBD to assume flexible conformations visited by agonists and reduced co-repressor binding surface at the LBD provide crucial structural insights into tamoxifen-resistance that complement our existing understanding.
Insights
Tamoxifen resistance in breast cancer may stem from how 4-hydroxy tamoxifen (4-OHT) binding to estrogen receptor alpha (ERα) allows flexible conformations and hinders co-repressor binding, offering new insights into treatment failure.
Area of Science:
- Molecular Biology
- Structural Biology
- Cancer Research
Background:
- Tamoxifen is a first-line treatment for ER-positive breast cancers.
- Resistance to tamoxifen develops in about 30% of cases, leading to tumor regrowth.
- The mechanisms underlying tamoxifen resistance, including ligand-independent pathways, are not fully understood.
Purpose of the Study:
- To investigate the structural basis of tamoxifen resistance using computational analysis.
- To elucidate how ligand binding affects the conformation of the ERα ligand binding domain (LBD).
- To understand the role of ERα structural dynamics in tamoxifen's efficacy and resistance.
Main Methods:
- In silico conformational analysis of the ERα ligand binding domain (LBD) dimer.
- Simulation of ligand binding with agonists (DES), antagonists (ICI), and SERMs (4-OHT).
- Analysis of structural modulations using principal component analysis and radius of gyration plots.
Main Results:
- Diethylstilbestrol (DES) and Faslodex (ICI) stabilized ERα-LBD in agonist and antagonist conformations, respectively.
- The ERα-LBD dimer without ligand adopted a stable agonist conformation.
- 4-hydroxy tamoxifen (4-OHT) binding induced a flexible ERα-LBD conformation, enabling visits to agonist-like states and reducing co-repressor binding pocket size.
Conclusions:
- The flexibility of 4-OHT-bound ERα-LBD and its diminished co-repressor binding surface offer structural insights into tamoxifen resistance.
- These findings suggest a mechanism for tamoxifen resistance related to ERα structural dynamics.
- Understanding these mechanisms could inform strategies to overcome tamoxifen resistance in breast cancer treatment.
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