The Protein Data Bank archive as an open data resource
Helen M Berman1, Gerard J Kleywegt, Haruki Nakamura
1RCSB PDB, Department of Chemistry and Chemical Biology and Center for Integrative Proteomics Research, Rutgers, The State University of New Jersey, Piscataway, NJ, 08854, USA, berman@rcsb.rutgers.edu.
Journal of Computer-Aided Molecular Design
|July 27, 2014
Summary
The Protein Data Bank, a vital biological data resource, has evolved over 40 years. Its enduring success stems from the interplay of science, technology, and community engagement.
Area of Science:
- Structural Biology
- Bioinformatics
- Open Science
Background:
- Established in 1971, the Protein Data Bank (PDB) is a key archive for biological macromolecular structure data.
- The PDB recently marked its 40th anniversary, highlighting its long-standing role in scientific research.
Observation:
- Analysis reveals intricate connections between scientific advancements, technological innovations, and community involvement.
- These interrelationships have been crucial for the PDB's sustained growth and relevance.
Findings:
- The PDB has become one of the most established and frequently utilized open-access data resources in the field of biology.
- Its evolution demonstrates a successful model for managing and disseminating scientific data.
Implications:
- Understanding the PDB's development offers insights into the sustainability of open-access scientific data repositories.
- This model can inform future strategies for biological data sharing and resource management.
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