CDKL5 variant in a boy with infantile epileptic encephalopathy: case report
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Published on: October 10, 2025
Virginia Chun-Nei Wong1, Anna Ka-Yee Kwong2
1Division of Paediatric Neurology/Developmental Behavioural Paediatrics/NeuroHabilitation, Department of Paediatrics and Adolescent Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region.
Insights
A novel CDKL5 gene variant was identified in a boy with severe epilepsy and developmental delay. Benzodiazepines showed efficacy in treating his Infantile Epileptic Encephalopathy (IEE).
Area of Science:
- Genetics
- Neurology
- Pediatrics
Background:
- Infantile Epileptic Encephalopathy (IEE) presents significant challenges in diagnosis and treatment.
- Early identification of genetic causes is crucial for targeted therapies.
Observation:
- An 18-month-old Chinese boy exhibited intractable epilepsy, developmental delay, and autistic features.
- Multiple seizure types were present, including absence, myoclonic, limb spasm, and tonic seizures.
- Seizure control was achieved at age 3 with clonazepam and chloral hydrate, leading to improved communication skills.
Findings:
- A novel hemizygous missense variant (c.1649G>A; p.R550Q) in the CDKL5 gene was identified.
- This variant was also found in his asymptomatic mother and elder sister.
- The patient's phenotype was less severe compared to other reported male cases.
Implications:
- Screening for CDKL5 gene mutations is recommended for boys with pharmacoresistant epilepsy.
- Benzodiazepines may be a beneficial therapeutic option for Infantile Epileptic Encephalopathy (IEE).
- Understanding CDKL5 variants can aid in predicting disease severity and guiding treatment strategies.
Unlabelled:
A Chinese boy presented at 18 months with intractable epilepsy, developmental delay and autistic features. He had multiple seizure types, including absence, myoclonic seizures, limb spasm and tonic seizures. His seizures were finally controlled at 3 years of age with clonazepam and a short course of chloral hydrate incidentally given for his insomnia. Subsequently, he had improvement in his communication skills.
Result:
A novel hemizygous missense variant (c.1649G>A; p.R550Q) in exon 12 of CDKL5 gene was detected for him, his asymptomatic mother and elder sister. His phenotype is less severe than other male cases.
Conclusion:
We recommend screening CDKL5 for boys with pharmarco-resistant epilepsy and a trial of benzodiazepines for Infantile Epileptic Encephalopathy (IEE).
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