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Updated: Apr 26, 2026

A Gnotobiotic System for Studying Microbiome Assembly in the Phyllosphere and in Vegetable Fermentation
Published on: June 3, 2020
Microbial diversity and flavor formation in onion fermentation
Lili Cheng1, Jianfei Luo, Pan Li
1School of Bioscience and Bioengineering, South China University of Technology, Guangzhou, 510006, P. R. China. btlxluo@scut.edu.cn.
Salted and unsalted fermented onions were analyzed for microbes and flavor. Fermentation increased organic acids and unique flavor compounds, with salt impacting amino acid levels and preserving onion
Area of Science:
- Food Microbiology and Fermentation Science
- Applied Microbiology
- Food Chemistry
Background:
- Fermented onion products are globally popular, yet the specific microbial communities and biochemical changes driving their unique characteristics require detailed investigation.
- Understanding the role of salt in fermentation is crucial for optimizing flavor profiles and preserving desirable qualities in fermented foods.
Purpose of the Study:
- To identify the dominant microorganisms responsible for onion fermentation, both with and without salt.
- To elucidate the biochemical changes, including organic acid and amino acid profiles, that contribute to the unique flavor of fermented onions.
- To determine the specific effects of salt on the fermentation process and the resulting product characteristics.
Main Methods:
- Polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) was employed to profile microbial communities.
- Analysis of organic acids, amino acids, esters, alcohols, and aldehydes was conducted to assess biochemical transformations.
- Comparative analysis of fermentation with and without salt was performed.
Main Results:
- Dominant microorganisms identified include lactic acid bacteria, acetic acid bacteria, citric acid bacteria, and yeasts.
- Fermentation significantly increased lactic and acetic acid levels. Unique flavor compounds like esters, alcohols, and aldehydes also increased.
- Salt fermentation inhibited organic acid accumulation and reduced total amino acids but preserved the characteristic onion odor by limiting sulfur compound degradation.
Conclusions:
- A diverse microbial consortium, including bacteria and yeasts, drives onion fermentation.
- Fermentation generates key organic acids and volatile compounds responsible for the distinct flavor profile of fermented onions.
- Salt plays a critical role in modulating fermentation, influencing acid and amino acid profiles while maintaining desirable aromatic qualities.
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