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Updated: Apr 24, 2026

Determination of the Gas-phase Acidities of Oligopeptides
Published on: June 24, 2013
Acidic and basic drugs in medicinal chemistry: a perspective.
Paul S Charifson1, W Patrick Walters
1Vertex Pharmaceuticals Incorporated , 50 Northern Avenue Boston, Massachusetts 02210, United States.
Drug molecule acidity and basicity are crucial for drug action but often overlooked in early design. This review highlights the pros and cons of acidic and basic drugs, using new data analysis.
Area of Science:
- Medicinal Chemistry
- Drug Design
- Pharmacology
Background:
- Molecular acid/base properties are fundamental to drug action.
- These properties are often considered late in drug design, only if specific ionization states are required for activity.
- Medicinal chemistry programs frequently reduce basicity to avoid issues like poor selectivity or safety risks (e.g., hERG channel interactions, phospholipidosis).
Purpose of the Study:
- To review the potential benefits and drawbacks of acidic and basic drugs.
- To analyze the strategic importance of considering compound pKa values prospectively in drug design.
- To provide new insights based on recent public data regarding acid/base properties in drug development.
Main Methods:
- Literature review of acidic and basic drug properties.
- Analysis of recently available public datasets.
- Exploration of strategic implications for medicinal chemistry design hypotheses.
Main Results:
- Acid/base properties significantly influence drug efficacy and safety.
- Attenuating basicity is common but may not be the optimal strategy.
- Prospective exploration of pKa values can enhance drug design strategies.
Conclusions:
- A deeper understanding and prospective consideration of molecular pKa are vital for successful drug design.
- Balancing the advantages and disadvantages of acidic and basic compounds is key to optimizing drug candidates.
- Future drug design should integrate pKa profiling as a core element of the chemistry strategy.
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