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Identification of Transcription Factor Regulators using Medium-Throughput Screening of Arrayed Libraries and a Dual-Luciferase-Based Reporter
Published on: March 27, 2020
Identification of small molecule modulators of gene transcription with anticancer activity
Tram Anh Tran1, Jennifer Wichterman-Kouznetsova, Diana Varghese
1Hamon Center for Therapeutic Oncology Research and ∥Department of Pharmacology, University of Texas Southwestern Medical Center , Dallas, Texas 75390, United States.
Abstract:
Epigenetic regulation of gene expression is essential in many biological processes, and its deregulation contributes to pathology including tumor formation. We used an image-based cell assay that measures the induction of a silenced GFP-estrogen receptor reporter to identify novel classes of small molecules involved in the regulation of gene expression. Using this Locus Derepression assay, we queried 283,122 compounds by quantitative high-throughput screening evaluating compounds at multiple concentrations. After confirmation and independent validation, the Locus Derepression assay identified 19 small molecules as new actives that induce the GFP message over 2-fold. Viability assays demonstrated that 17 of these actives have anti-proliferative activity, and two of them show selectivity for cancer versus patient-matched normal cells and cause unique changes in gene expression patterns in cancer cells by altering histone marks. Hence, these compounds represent chemical tools for understanding the molecular mechanisms of epigenetic control of transcription and for modulating cell growth pathways.
Insights
Researchers identified 19 novel small molecules that regulate gene expression and impact cell growth. Two compounds selectively target cancer cells, offering potential for new epigenetic therapies.
Area of Science:
- Molecular Biology
- Epigenetics
- Chemical Biology
Background:
- Epigenetic gene regulation is crucial for biological processes.
- Dysregulation of epigenetics contributes to diseases like cancer.
Purpose of the Study:
- To identify novel small molecules regulating gene expression using a high-throughput screening assay.
- To find compounds that can modulate epigenetic mechanisms for therapeutic potential.
Main Methods:
- Utilized an image-based Locus Derepression assay for quantitative high-throughput screening of 283,122 compounds.
- Validated identified compounds through confirmation and independent testing.
- Assessed anti-proliferative activity and cancer cell selectivity.
Main Results:
- Identified 19 small molecules that induce reporter gene expression over 2-fold.
- 17 compounds exhibited anti-proliferative effects.
- Two compounds demonstrated cancer cell selectivity and altered histone marks.
Conclusions:
- The identified compounds are valuable chemical tools for studying epigenetic regulation of transcription.
- These molecules offer potential for developing new strategies to modulate cell growth pathways in cancer.
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