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Updated: Apr 24, 2026

Purification of the Sarco-Endoplasmic Reticulum Ca2+-ATPase from Rabbit Muscle
Published on: March 21, 2025
Critical roles of interdomain interactions for modulatory ATP binding to sarcoplasmic reticulum Ca2+-ATPase
Johannes D Clausen1, Anne Nyholm Holdensen1, Jens Peter Andersen2
1From the Department of Biomedicine, Aarhus University, DK-8000 Aarhus C, Denmark, and the Centre for Membrane Pumps in Cells and Disease-PUMPKIN, Danish National Research Foundation, Department of Molecular Biology and Genetics, Aarhus University, DK-8000 Aarhus C, Denmark.
Abstract:
ATP has dual roles in the reaction cycle of sarcoplasmic reticulum Ca(2+)-ATPase. Upon binding to the Ca2E1 state, ATP phosphorylates the enzyme, and by binding to other conformational states in a non-phosphorylating modulatory mode ATP stimulates the dephosphorylation and other partial reaction steps of the cycle, thereby ensuring a high rate of Ca(2+) transport under physiological conditions. The present study elucidates the mechanism underlying the modulatory effect on dephosphorylation. In the intermediate states of dephosphorylation the A-domain residues Ser(186) and Asp(203) interact with Glu(439) (N-domain) and Arg(678) (P-domain), respectively. Single mutations to these residues abolish the stimulation of dephosphorylation by ATP. The double mutation swapping Asp(203) and Arg(678) rescues ATP stimulation, whereas this is not the case for the double mutation swapping Ser(186) and Glu(439). By taking advantage of the ability of wild type and mutant Ca(2+)-ATPases to form stable complexes with aluminum fluoride (E2·AlF) and beryllium fluoride (E2·BeF) as analogs of the E2·P phosphoryl transition state and E2P ground state, respectively, of the dephosphorylation reaction, the mutational effects on ATP binding to these intermediates are demonstrated. In the wild type Ca(2+)-ATPase, the ATP affinity of the E2·P phosphoryl transition state is higher than that of the E2P ground state, thus explaining the stimulation of dephosphorylation by nucleotide-induced transition state stabilization. We find that the Asp(203)-Arg(678) and Ser(186)-Glu(439) interdomain bonds are critical, because they tighten the interaction with ATP in the E2·P phosphoryl transition state. Moreover, ATP binding and the Ser(186)-Glu(439) bond are mutually exclusive in the E2P ground state.
Insights
Adenosine triphosphate (ATP) modulates sarcoplasmic reticulum Ca(2+)-ATPase dephosphorylation by stabilizing the transition state. Specific interdomain interactions, like Asp(203)-Arg(678), are crucial for this ATP-stimulated dephosphorylation mechanism.
Area of Science:
- Biochemistry
- Molecular Biology
- Enzymology
Background:
- Sarcoplasmic reticulum Ca(2+)-ATPase (SERCA) utilizes adenosine triphosphate (ATP) for calcium ion (Ca(2+)) transport.
- ATP has dual roles in the SERCA reaction cycle: phosphorylation and non-phosphorylating modulation.
- The modulatory role of ATP enhances dephosphorylation and overall Ca(2+) transport efficiency.
Purpose of the Study:
- To elucidate the molecular mechanism by which ATP modulates the dephosphorylation step in Ca(2+)-ATPase.
- To identify specific amino acid residues and interdomain interactions critical for ATP-stimulated dephosphorylation.
Main Methods:
- Site-directed mutagenesis of key residues (Ser(186), Asp(203), Glu(439), Arg(678)) in Ca(2+)-ATPase.
- Construction and characterization of wild-type and mutant Ca(2+)-ATPases.
- Formation of stable complexes with aluminum fluoride (E2·AlF) and beryllium fluoride (E2·BeF) to mimic dephosphorylation intermediates.
- Assessment of ATP binding affinities to these intermediates.
Main Results:
- Single mutations of Ser(186) or Asp(203) abolished ATP stimulation of dephosphorylation.
- The Asp(203)-Arg(678) interdomain interaction is critical for ATP stimulation, while Ser(186)-Glu(439) is not sufficient.
- ATP binding affinity is higher for the E2·P transition state than the E2P ground state in wild-type enzyme, indicating transition state stabilization.
- The Asp(203)-Arg(678) and Ser(186)-Glu(439) bonds stabilize ATP interaction in the E2·P state; Ser(186)-Glu(439) binding is mutually exclusive with ATP in the E2P state.
Conclusions:
- The modulatory effect of ATP on Ca(2+)-ATPase dephosphorylation is mediated by nucleotide-induced transition state stabilization.
- Specific interdomain interactions, particularly Asp(203)-Arg(678), are essential for tightening ATP interaction in the transition state.
- The interplay between ATP binding and interdomain bonds dictates the enzyme's conformational states and catalytic cycle efficiency.
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