The mammalian circadian system: models and physiology

Mammalian circadian rhythms have been studied in great detail using primarily two different methods. One method is usually referred to as the formal analysis of rhythms. Its goal is to describe the properties of both rhythms and their underlying mechanisms, and it aims at the development of adequate mathematical models of the circadian system. The other method is the physiological analysis of the mechanisms that generate and entrain rhythms. Its goal is the identification of the anatomical components of the circadian system and the elucidation at a cellular and molecular level of how these components work. This paper reviews how the formal analysis of circadian systems, primarily in rodents, set the agenda for physiological studies, and the degree to which this agenda has been fulfilled. It then discusses how physiological analyses of the system have helped to redefine issues such as the nature and identity of the pacemaker, the nature of the entrainment process, the roles of photic and nonphotic cues, and the role of feedback in the circadian system. The continued commerce between these two approaches has led to a sophisticated appreciation of the complexities and subtleties of circadian organization in mammals. The further integration of formal and physiological analyses remains a challenging goal for the future.