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Updated: Apr 23, 2026

Three-dimensional Imaging of Bacterial Cells for Accurate Cellular Representations and Precise Protein Localization
Published on: October 29, 2019
Small-molecule labeling of live cell surfaces for three-dimensional super-resolution microscopy
Marissa K Lee1, Prabin Rai, Jarrod Williams
1Department of Chemistry, Stanford University , Stanford, California 94305, United States.
We developed a new rhodamine spirolactam dye for non-toxic, super-resolution (SR) imaging of bacterial cell surfaces. This photocontrollable emitter allows precise visualization of cellular structures with visible light, enabling new insights into cell growth.
Area of Science:
- Microscopy and Imaging
- Chemical Biology
- Bacterial Cell Biology
Background:
- Bacterial cell surface imaging requires super-resolution methods due to size limitations.
- Conventional rhodamine spirolactams use damaging UV light for photoswitching.
Purpose of the Study:
- To develop a photocontrollable rhodamine spirolactam for non-toxic, 3D super-resolution (SR) imaging.
- To enable specific labeling of live bacterial cell surfaces.
Main Methods:
- Iterative synthesis and spectroscopic characterization of rhodamine spirolactams.
- Functionalization with N-hydroxysuccinimide for covalent amine labeling.
- 3D super-resolution (SR) microscopy of labeled Caulobacter crescentus.
Main Results:
- Optimized rhodamine spirolactam photoswitches with visible light (>400 nm).
- Covalent labeling achieved uniform and specific sampling of bacterial cell surfaces.
- High-resolution (10-20 nm) 3D SR reconstructions revealed cell stalk length distribution and growth sites.
Conclusions:
- Photocontrollable rhodamine spirolactams offer a non-toxic, specific labeling strategy for live-cell SR imaging.
- This method allows detailed study of bacterial surface dynamics and structures.
- The optimized dye is a versatile tool for nanoscale biological imaging.
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