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Updated: Apr 23, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Selected drugs that inhibit DNA methylation can preferentially kill p53 deficient cells
Lan Yi1, Yvonne Sun1, Arnold Levine2
1Rutgers Cancer Institute of New Jersey, New Brunswick, New Jersey. Department of Pediatrics, Rutgers New Jersey Medical School, Piscataway, New Jersey.
Abstract:
The p53 protein ensures cellular fidelity by suppressing or killing cells under stresses that enhance the mutation rate. Evidence suggests that the p53 protein may also ensure the fidelity of the epigenome. In this study a group of drugs that alter the deoxycytosine methylation patterns in cellular DNA are shown to preferentially kill human and mouse cells that contain p53 mutations or deficiencies. These observations are extended to mice that contain p53 deficiencies or missense mutations in their genome, which are preferentially killed when compared to mice with a wild type p53 gene. This is also the case for human cancer cell xenografts containing p53 mutations, which preferentially are killed by these drugs when compared to similar tumors with wild type p53. The loss of p53 function enhances a synthetic lethality with drugs that block or alter the patterns of deoxycytidine methylation in the genome.
Insights
The tumor suppressor protein p53 maintains genome stability. Loss of p53 function causes synthetic lethality with DNA methylation altering drugs in cells and animal models.
Area of Science:
- Molecular Biology
- Genetics
- Cancer Research
Background:
- The p53 protein is a critical regulator of cellular fidelity, preventing mutations under stress.
- Emerging evidence suggests p53 also plays a role in maintaining epigenome stability.
- Deoxycytosine methylation patterns are crucial epigenetic marks in the genome.
Purpose of the Study:
- To investigate the relationship between p53 status and sensitivity to drugs that alter DNA methylation.
- To determine if p53 deficiency or mutation leads to synthetic lethality with DNA methylation inhibitors.
Main Methods:
- Treatment of human and mouse cells with p53 mutations/deficiencies and wild-type controls using DNA methylation-altering drugs.
- In vivo studies using mice with p53 deficiencies or missense mutations.
- Evaluation of human cancer cell xenografts with varying p53 functional status.
Main Results:
- Cells and mice with p53 mutations or deficiencies were preferentially killed by DNA methylation-altering drugs.
- Human cancer xenografts with p53 mutations showed increased sensitivity to these drugs compared to wild-type tumors.
- Loss of p53 function was found to enhance synthetic lethality with drugs targeting deoxycytidine methylation.
Conclusions:
- p53 status significantly influences cellular and organismal response to DNA methylation-modulating therapies.
- The findings reveal a synthetic lethal interaction between p53 loss and drugs affecting DNA methylation patterns.
- This suggests potential therapeutic strategies targeting cancers with p53 alterations.
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