Echinocandin resistance, susceptibility testing and prophylaxis: implications for patient management
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Updated: Apr 23, 2026

Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance
Published on: December 28, 2017
1Public Health Research Institute, New Jersey Medical School, Rutgers, The State University of New Jersey, Newark, NJ, 07103, USA, perlinds@njms.rutgers.edu.
Abstract:
This article addresses the emergence of echinocandin resistance among Candida species, mechanisms of resistance, factors that promote resistance and confounding issues surrounding standard susceptibility testing. Fungal infections remain a significant cause of global morbidity and mortality, especially among patients with underlying immunosupression. Antifungal therapy is a critical component of patient management for acute and chronic diseases. Yet, therapeutic choices are limited due to only a few drug classes available to treat systemic disease. Moreover, the problem is exacerbated by the emergence of antifungal resistance, which has resulted in difficult to manage multidrug resistant strains. Echinocandin drugs are now the preferred choice to treat a range of candidiasis. These drugs target and inhibit the fungal-specific enzyme glucan synthase, which is responsible for the biosynthesis of a key cell wall polymer. Therapeutic failures involving acquisition of resistance among susceptible organisms like Candida albicans is largely a rare event. However, in recent years, there is an alarming trend of increased resistance among strains of Candida glabrata, which in many cases are also resistant to azole drugs. Echinocandin resistance is always acquired during therapy and the mechanism of resistance is well established to involve amino acid changes in "hot-spot" regions of the Fks subunits carrying the catalytic portion of glucan synthase. These changes significantly decrease the sensitivity of the enzyme to drug resulting in higher MIC values. A range of drug responses, from complete to partial refractory response, is observed depending on the nature of the amino acid substitution, and clinical responses are recapitulated in pharmacodynamic models of infection. The cellular processes promoting the formation of resistant Fks strains involve complex stress response pathways, which yield a variety of adaptive compensatory genetic responses. Stress-adapted cells become drug tolerant and can form stable drug resistant FKS mutations with continued drug exposure. A major concern for resistance detection is that classical broth microdilution techniques show significant variability among clinical microbiology laboratories for certain echinocandin drugs and Candida species. The consequence is that susceptible strains are misclassified according to established clinical breakpoints, and this has led to confusion in the field. Clinical factors that appear to promote echinocandin resistance include the expanding use of antifungal agents for empiric therapy and prophylaxis. Furthermore, host reservoirs such as biofilms in the gastrointestinal tract or intra-abdominal infections can seed development of resistant organisms during therapy. A fundamental understanding of the primary molecular resistance mechanism, along with cellular and clinical factors that promote resistance emergence, is critical to develop better diagnostic tools and therapeutic strategies to overcome and prevent echinocandin resistance.
Insights
Echinocandin resistance in Candida species, particularly Candida glabrata, is increasing due to Fks mutations. Understanding resistance mechanisms and improving susceptibility testing are crucial for effective antifungal therapy.
Area of Science:
- Medical Mycology
- Antimicrobial Resistance
- Infectious Diseases
Background:
- Fungal infections cause significant morbidity and mortality, especially in immunocompromised patients.
- Limited antifungal drug classes and emerging resistance complicate treatment.
- Echinocandins are preferred for candidiasis but resistance is a growing concern, particularly in Candida glabrata.
Purpose of the Study:
- To address the emergence of echinocandin resistance in Candida species.
- To elucidate resistance mechanisms, contributing factors, and challenges in susceptibility testing.
- To highlight the need for improved diagnostics and therapeutics.
Main Methods:
- Review of mechanisms of echinocandin resistance, focusing on Fks mutations.
- Analysis of cellular processes and clinical factors promoting resistance.
- Evaluation of variability in standard susceptibility testing methods.
Main Results:
- Echinocandin resistance is acquired during therapy, primarily through amino acid changes in Fks subunits of glucan synthase.
- Candida glabrata shows alarming resistance trends, often co-resistant to azoles.
- Broth microdilution testing shows significant variability, leading to misclassification of strains.
Conclusions:
- Understanding echinocandin resistance mechanisms and contributing factors is vital.
- Improved diagnostic tools and therapeutic strategies are needed to combat resistance.
- Addressing variability in susceptibility testing is critical for accurate patient management.
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