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Updated: Apr 23, 2026

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
Published on: January 16, 2019
PINBPA: cytoscape app for network analysis of GWAS data
Lili Wang1, Takuya Matsushita1, Lohith Madireddy1
1School of Computing, Queen's University, 25 Union Street, Goodwin Hall, Kingston, Ontario K7L 3N6, Canada and Department of Neurology, University of California San Francisco, 675 Nelson Rising Lane, Room 215, San Francisco, CA 94158, USA.
Unlabelled:
Protein interaction network-based pathway analysis (PINBPA) for genome-wide association studies (GWAS) has been developed as a Cytoscape app, to enable analysis of GWAS data in a network fashion. Users can easily import GWAS summary-level data, draw Manhattan plots, define blocks, prioritize genes with random walk with restart, detect enriched subnetworks and test the significance of subnetworks via a user-friendly interface.
Availability And Implementation:
PINBPA app is freely available in Cytoscape app store.
Supplementary Information:
Supplementary data are available at Bioinformatics online.

