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An Integrated Raman Spectroscopy and Mass Spectrometry Platform to Study Single-Cell Drug Uptake, Metabolism, and Effects
Published on: January 9, 2020
Breast anticancer drug tamoxifen and its metabolites bind tRNA at multiple sites
P Bourassa1, T J Thomas2, J Bariyanga3
1Department of Chemistry-Physics, University of Québec in Trois-Rivières, C. P. 500, Trois-Rivières, Québec G9A 5H7, Canada.
Abstract:
The binding sites of breast anticancer drug tamoxifen and its metabolites with tRNA were located by FTIR, CD, UV-visible, and fluorescence spectroscopic methods and molecular modeling. Structural analysis showed that tamoxifen and its metabolites bind tRNA at several binding sites with overall binding constants of K(tam-tRNA) = 5.2 (± 0.6) × 10(4) M(-1), K(4-hydroxytam-tRNA) = 6.5 ( ± 0.5) × 10(4) M(-1) and K(endox-tRNA) = 1.3 (± 0.2) × 10(4) M(-1). The number of binding sites occupied by drug molecules on tRNA were 1 (tamoxifen), 0.8 (4-hydroxitamoxifen) and 1.2 (endoxifen). Docking showed the participation of several nucleobases in drug-tRNA complexes with the free binding energy of -4.31 (tamoxifen), -4.45 (4-hydroxtamoxifen) and -4.38 kcal/mol (endoxifen). The order of binding is 4-hydroxy-tamoxifen > tamoxifen > endoxifen. Drug binding did not alter tRNA conformation from A-family structure, while biopolymer aggregation occurred at high drug concentration.
Insights
Breast cancer drug tamoxifen and its metabolites bind to transfer RNA (tRNA) at multiple sites. 4-hydroxy-tamoxifen exhibits the strongest binding affinity, influencing tRNA structure minimally at low concentrations.
Area of Science:
- Biochemistry
- Molecular Biology
- Pharmacology
Background:
- Tamoxifen is a widely used drug for treating estrogen receptor-positive breast cancer.
- Understanding drug-target interactions at a molecular level is crucial for drug development and efficacy.
- Transfer RNA (tRNA) plays essential roles in protein synthesis and can be a target for small molecules.
Purpose of the Study:
- To investigate the binding interactions between tamoxifen and its major metabolites (4-hydroxytamoxifen and endoxifen) with tRNA.
- To determine the binding sites, affinity, and structural consequences of these interactions.
- To elucidate the molecular mechanisms underlying tamoxifen's action at the tRNA level.
Main Methods:
- Fourier-transform infrared (FTIR) spectroscopy
- Circular dichroism (CD) spectroscopy
- UV-visible spectroscopy
- Fluorescence spectroscopy
- Molecular docking simulations
Main Results:
- Tamoxifen and its metabolites bind to tRNA at multiple sites with significant binding constants.
- The binding affinity order was determined as 4-hydroxytamoxifen > tamoxifen > endoxifen.
- Molecular docking revealed interactions with specific nucleobases, with calculated free binding energies.
- tRNA conformation remained largely unchanged (A-family structure), but biopolymer aggregation was observed at high drug concentrations.
Conclusions:
- Tamoxifen and its metabolites interact with tRNA, suggesting a potential alternative mechanism of action.
- The differential binding affinities of tamoxifen and its metabolites to tRNA may influence their pharmacological profiles.
- While tRNA structure is preserved, high drug concentrations can induce aggregation, warranting further investigation into cellular effects.
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