Related Experiment Videos

Correlation of PCSK9 gene polymorphism with cerebral ischemic stroke in Xinjiang Han and Uygur populations

Dengfeng Han1, Jianhua Ma1, Xiaoning Zhang1

  • 1Department of Neurology, First Affiliated Hospital of Xinjiang Medical University, Urumqi, China (mainland).

Insights

Specific PCSK9 gene variants are linked to cerebral ischemic stroke (CIS) risk in the Han Chinese population. The A-C haplotype of PCSK9 may serve as a genetic marker for CIS in this group.

Area of Science:

  • Genetics
  • Cardiovascular Medicine
  • Neurology

Background:

  • Cerebral ischemic stroke (CIS) is a leading cause of death and disability.
  • Atherosclerosis (AS) underlies CIS, with dyslipidemia as a primary risk factor.
  • Human proprotein convertase subtilisin/kexin9 (PCSK9) regulates low-density lipoprotein (LDL) cholesterol.

Purpose of the Study:

  • To investigate the association between PCSK9 gene polymorphisms and CIS.
  • To compare these associations in Chinese Han and Uygur populations.

Main Methods:

  • Genotyping of 20 single-nucleotide polymorphisms (SNPs) in the PCSK9 gene.
  • Utilized the single-base terminal extension (SNaPshot) method.
  • Analyzed 408 CIS patients and 348 controls.

Main Results:

  • SNP8 (rs529787) genotype distribution differed significantly between CIS cases and controls.
  • In the Han population, SNPs 1 (rs1711503), 2 (rs2479408), and 8 (rs529787) showed significant associations with CIS.
  • The A-C haplotype (rs1711503 and rs2479408) was significantly associated with CIS risk in the Han population.

Conclusions:

  • PCSK9 gene variants rs1711503 and rs2479408 are associated with CIS in the Han Chinese population.
  • The A-C haplotype of PCSK9 may indicate an increased genetic risk for CIS in this population.
Abstract

Related Concept Videos

Single Nucleotide Polymorphisms-SNPs01:05

Single Nucleotide Polymorphisms-SNPs

A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
14.1K
Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu01:29

Pharmacogenetic Phenotypes: Alterations in Pharmacokinetics, Drug Targets and Biologic Milieu

Genetic variations significantly influence drug response through pharmacokinetics, receptor interactions, and biologic milieu modifications. Pharmacokinetic alterations impact drug metabolism and clearance, affecting efficacy and toxicity. Variants in drug-metabolizing enzymes, such as CYP2C9 and CYP2C19, alter drug activation and elimination. For example, CYP2C9 loss-of-function variants require lower warfarin doses to prevent excessive bleeding, while CYP2C19 variants reduce clopidogrel...
155
Pharmacogenomics: Identification of New Drug Targets01:29

Pharmacogenomics: Identification of New Drug Targets

Advances in genomics have profoundly influenced drug discovery by increasing both the speed and accuracy of pharmaceutical development. Pharmacogenomics, which examines how genetic variation influences drug response, facilitates the identification of novel therapeutic targets and enables patient stratification for personalized treatment. These strategies contribute to improved drug efficacy, minimized adverse effects, and more efficient clinical trial design.Mapping genetic differences...
113
Genome-wide Association Studies-GWAS01:11

Genome-wide Association Studies-GWAS

Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
12.2K
Pharmacogenetics of Phase I Enzymes: Cytochrome P450 Isozymes01:28

Pharmacogenetics of Phase I Enzymes: Cytochrome P450 Isozymes

Cytochrome P450 (CYP450) enzymes are a superfamily of heme-containing monooxygenases that play a pivotal role in Phase I drug metabolism by catalyzing oxidation and reduction reactions.These enzymes transform lipophilic xenobiotics into more hydrophilic metabolites, facilitating subsequent Phase II conjugation and eventual excretion. The CYP450 family is classified into families (e.g., CYP1–CYP3) and subfamilies (e.g., CYP2A, CYP2C), based on amino acid sequence homology.CYP450...
325
Principles of Pharmacogenetics: Types of Genetic Variants01:27

Principles of Pharmacogenetics: Types of Genetic Variants

The human genome is over 99.9% identical between individuals, yet genetic differences exist at millions of bases. The human genome contains approximately 3 million variant positions per individual, many of which are heterozygous, contributing to genetic diversity and individual traits. Genetic variations include single-nucleotide polymorphisms (SNPs), insertions, deletions, and copy number variations (CNVs).SNPs, the most common variation, involve single-base changes in DNA. These can be...
133