Exploiting space-group symmetry in fragment-based molecular crystal calculations
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Updated: Apr 23, 2026

Workflow and Tools for Crystallographic Fragment Screening at the Helmholtz-Zentrum Berlin
Published on: March 3, 2021
Yonaton Heit1, Gregory J O Beran
1Department of Chemistry, University of California, Riverside, California, 92521.
Abstract:
Recent developments in fragment-based methods make it increasingly feasible to use high-level ab initio electronic structure techniques to molecular crystals. Such studies remain computationally demanding, however. Here, we describe a straightforward algorithm for exploiting space-group symmetry in fragment-based methods which often provides computational speed-ups of several fold or more. This algorithm does not require a priori specification of the space group or symmetry operators. Rather, the symmetrically equivalent fragments are identified automatically by aligning the individual fragments along their principle axes of inertia and testing for equivalence with other fragments. The symmetry operators relating equivalent fragments can then be worked out easily. Implementation of this algorithm for computing energies, nuclear gradients with respect to both atomic coordinates and lattice parameters, and the nuclear hessian is described.
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