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Updated: Apr 23, 2026

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Dnase2a deficiency uncovers lysosomal clearance of damaged nuclear DNA via autophagy
Yuk Yuen Lan1, Diana Londoño2, Richard Bouley3
1Center for Immunology and Inflammatory Diseases, Massachusetts General Hospital, 149 13(th) Street, Charlestown, MA 02129, USA; Broad Institute, 415 Main Street, Cambridge, MA 02142, USA; Department of Medicine, Harvard Medical School, Boston, MA 02115, USA.
Abstract:
Deficiencies in DNA-degrading nucleases lead to accumulation of self DNA and induction of autoimmunity in mice and in monogenic and polygenic human diseases. However, the sources of DNA and the mechanisms that trigger immunity remain unclear. We analyzed mice deficient for the lysosomal nuclease Dnase2a and observed elevated levels of undegraded DNA in both phagocytic and nonphagocytic cells. In nonphagocytic cells, the excess DNA originated from damaged DNA in the nucleus based on colocalization studies, live-cell imaging, and exacerbation by DNA-damaging agents. Removal of damaged DNA by Dnase2a required nuclear export and autophagy-mediated delivery of the DNA to lysosomes. Finally, DNA was found to accumulate in Dnase2a(-/-) or autophagy-deficient cells and induce inflammation via the Sting cytosolic DNA-sensing pathway. Our results reveal a cell-autonomous process for removal of damaged nuclear DNA with implications for conditions with elevated DNA damage, such as inflammation, cancer, and chemotherapy.
Insights
Deficiencies in DNA-degrading nucleases cause self DNA accumulation and autoimmunity. This study reveals a cellular process for removing damaged nuclear DNA via autophagy and lysosomes, preventing inflammation.
Area of Science:
- Molecular Biology
- Immunology
- Cell Biology
Background:
- Deficiencies in DNA-degrading nucleases are linked to autoimmunity due to self DNA accumulation.
- The precise sources of DNA and triggers for immunity remain incompletely understood.
Purpose of the Study:
- To investigate the role of the lysosomal nuclease Dnase2a in DNA degradation and autoimmunity.
- To elucidate the mechanisms of damaged nuclear DNA removal and its implications for cellular homeostasis.
Main Methods:
- Analysis of mice deficient in Dnase2a.
- Colocalization studies and live-cell imaging to track DNA.
- Investigation of autophagy-mediated DNA delivery to lysosomes.
- Assessment of inflammation via the Sting pathway.
Main Results:
- Elevated undegraded DNA levels were observed in both phagocytic and nonphagocytic cells of Dnase2a-deficient mice.
- Damaged nuclear DNA was identified as a major source of excess DNA in nonphagocytic cells.
- Dnase2a-mediated DNA removal requires nuclear export and autophagy for lysosomal delivery.
- Accumulated DNA in Dnase2a-deficient or autophagy-deficient cells induced inflammation through the Sting pathway.
Conclusions:
- Dnase2a plays a crucial role in a cell-autonomous pathway for removing damaged nuclear DNA.
- This pathway involves nuclear export, autophagy, and lysosomal degradation.
- Dysregulation of this process can lead to DNA accumulation and inflammation, with implications for cancer and chemotherapy treatments.
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