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Updated: Apr 22, 2026

Genome-wide Screen for miRNA Targets Using the MISSION Target ID Library
Published on: April 6, 2012
Evolution of the mir-155 family and possible targets in cancers and the immune system
Guang-Bing Xie1, Wei-Jia Liu, Zhi-Jun Pan
1College of Orient Science and Technology, Hunan Agriculture University, Changsha, China
Abstract:
The mir-155 family is not only involved in a diversity of cancers, but also as a regulator of the immune system. However, the evolutionary history of this family is still unclear. The present study indicates that mir-155 evolved independently with lineage-specific gain of miRNAs. In addition, arm switching has occurred in the mir-155 family, and alternative splicing could produce two different lengths of ancestral sequences, implying the alternative splicing can also drive evolution for intragenic miRNAs. Here we screened validated target genes and immunity- related proteins, followed by analyzation of the mir-155 family function by high-throughput methods like the gene ontology (GO) and Kyoto Eneyclopedin of Genes and Genemes (KEGG) pathway enrichment analysis. The high-throughput analysis showed that the CCND1 and EGFR genes were outstanding in being significantly enriched, and the target genes cebpb and VCAM1 and the protein SMAD2 were also vital in mir-155-related immune reponse activities. Therefore, we conclude that the mir-155 family is highly conserved in evolution, and CCND1 and EGFR genes might be potential targets of mir-155 with regard to progress of cancers, while the cebpb and VCAM1 genes and the protein SMAD2 might be key factors in the mir-155 regulated immune activities.
Insights
The microRNA-155 (miR-155) family evolved independently, with lineage-specific gains and alternative splicing driving its evolution. This family plays a conserved role in cancer and immunity, targeting genes like CCND1 and EGFR.
Area of Science:
- Evolutionary biology
- Molecular biology
- Genetics
Background:
- The microRNA-155 (miR-155) family is implicated in various cancers and immune system regulation.
- The evolutionary trajectory and mechanisms of the miR-155 family remain incompletely understood.
Purpose of the Study:
- To elucidate the evolutionary history of the miR-155 family.
- To analyze the functional roles of miR-155 in cancer and immunity.
Main Methods:
- Comparative genomic analysis to trace miRNA evolution.
- Identification of lineage-specific miRNA gains and arm switching events.
- High-throughput methods including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis.
Main Results:
- miR-155 evolved independently with lineage-specific miRNA gains.
- Alternative splicing contributes to the evolution of intragenic miRNAs within the miR-155 family.
- CCND1 and EGFR identified as significantly enriched target genes potentially linked to cancer.
- cebpb, VCAM1, and SMAD2 highlighted as vital in miR-155-regulated immune responses.
Conclusions:
- The miR-155 family is evolutionarily conserved.
- CCND1 and EGFR are potential miR-155 targets in cancer progression.
- cebpb, VCAM1, and SMAD2 are key factors in miR-155-mediated immune activities.
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