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Updated: Apr 22, 2026

Fecal Microbiota Transplantation via Colonoscopy for Recurrent C. difficile Infection
Published on: December 8, 2014
Oral, capsulized, frozen fecal microbiota transplantation for relapsing Clostridium difficile infection
Ilan Youngster1, George H Russell2, Christina Pindar3
1Division of Infectious Diseases, Massachusetts General Hospital, Boston2Harvard Medical School, Boston, Massachusetts3Division of Infectious Diseases, Boston Children's Hospital, Boston, Massachusetts.
Importance:
Fecal microbiota transplantation (FMT) has been shown to be effective in treating relapsing or refractory Clostridium difficile infection, but practical barriers and safety concerns have prevented its widespread use.
Objective:
To evaluate the safety and rate of resolution of diarrhea following administration of frozen FMT capsules from prescreened unrelated donors to patients with recurrent C. difficile infection.
Design, Setting, And Participants:
Open-label, single-group, preliminary feasibility study conducted from August 2013 through June 2014 at Massachusetts General Hospital, Boston. Twenty patients (median age, 64.5 years; range, 11-89 years) with at least 3 episodes of mild to moderate C. difficile infection and failure of a 6- to 8-week taper with vancomycin or at least 2 episodes of severe C. difficile infection requiring hospitalization were enrolled.
Interventions:
Healthy volunteers were screened as potential donors and FMT capsules were generated and stored at -80°C (-112°F). Patients received 15 capsules on 2 consecutive days and were followed up for symptom resolution and adverse events for up to 6 months.
Main Outcomes And Measures:
The primary end points were safety, assessed by adverse events of grade 2 or above, and clinical resolution of diarrhea with no relapse at 8 weeks. Secondary end points included improvement in subjective well-being per standardized questionnaires and daily number of bowel movements.
Results:
No serious adverse events attributed to FMT were observed. Resolution of diarrhea was achieved in 14 patients (70%; 95% CI, 47%-85%) after a single capsule-based FMT. All 6 nonresponders were re-treated; 4 had resolution of diarrhea, resulting in an overall 90% (95% CI, 68%-98%) rate of clinical resolution of diarrhea (18/20). Daily number of bowel movements decreased from a median of 5 (interquartile range [IQR], 3-6) the day prior to administration to 2 (IQR, 1-3) at day 3 (P = .001) and 1 (IQR, 1-2) at 8 weeks (P < .001). Self-ranked health scores improved significantly on a scale of 1 to 10 from a median of 5 (IQR, 5-7) for overall health and 4.5 (IQR, 3-7) for gastrointestinal-specific health on the day prior to FMT to 8 (IQR, 7-9) after FMT administration for both overall and gastrointestinal health (P = .001). Patients needing a second treatment to obtain resolution of diarrhea had lower pretreatment health scores (median, 6.5 [IQR, 5-7.3] vs 5 [IQR, 2.8-5]; P = .02).
Conclusions And Relevance:
This preliminary study among patients with relapsing C. difficile infection provides data on adverse events and rates of resolution of diarrhea following administration of FMT using frozen encapsulated inoculum from unrelated donors. Larger studies are needed to confirm these results and to evaluate long-term safety and effectiveness.
Trial Registration:
clinicaltrials.gov Identifier: NCT01914731.
Insights
Fecal microbiota transplantation (FMT) capsules safely resolved diarrhea in 90% of patients with recurrent C. difficile infection. This study shows promising results for FMT as a viable treatment option.
Area of Science:
- Gastroenterology
- Microbiome research
- Infectious diseases
Background:
- Recurrent Clostridium difficile infection (CDI) poses treatment challenges.
- Fecal microbiota transplantation (FMT) shows efficacy but faces practical and safety barriers.
- Capsule-based FMT offers a potentially more accessible administration route.
Purpose of the Study:
- To assess the safety and efficacy of frozen, encapsulated FMT from unrelated donors.
- To determine the rate of diarrhea resolution in patients with recurrent CDI.
- To evaluate improvements in patient well-being and bowel movement frequency.
Main Methods:
- Open-label, single-group feasibility study.
- Twenty patients with recurrent CDI received 15 FMT capsules over two days.
- Safety assessed via adverse events; efficacy by diarrhea resolution at 8 weeks.
Main Results:
- No serious FMT-related adverse events observed.
- Diarrhea resolved in 70% after one FMT course, with an overall 90% resolution after re-treatment.
- Significant improvements in bowel movement frequency and self-reported health scores were noted.
Conclusions:
- Frozen, encapsulated FMT is a safe and effective option for recurrent CDI.
- This approach demonstrates high rates of diarrhea resolution and improved quality of life.
- Larger studies are warranted to confirm long-term safety and effectiveness.
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