Related Experiment Video
Updated: Apr 21, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Common mutation causes cystinosis in the majority of black South African patients
E Patricia Owen1, Jenisha Nandhlal, Felicity Leisegang
1Division of Chemical Pathology, University of Cape Town-National Health Laboratory Service South Africa, Cape Town, South Africa.
Insights
A common G>A mutation in the CTNS gene (c.971-12G>A) was identified in most South African cystinosis patients. This finding aids in diagnosing cystinosis in black South African and Cape Coloured populations.
Area of Science:
- Genetics
- Pediatrics
- Rare Diseases
Background:
- Cystinosis mutations in South African patients were previously unknown.
- This study investigated if these mutations align with those found globally.
Purpose of the Study:
- To identify the genetic mutations causing cystinosis in South African children.
- To determine the prevalence of specific mutations within this population.
Main Methods:
- Molecular analysis of the cystinosis gene (CTNS) in 20 pediatric patients.
- Sequence variation detection in children from the Western Cape Province (2002-2013).
Main Results:
- A specific G>A mutation (CTNS-c.971-12G>A) was found in 19 out of 20 patients.
- This mutation was the most frequent in black South African (96%) and Cape Coloured (71%) patients.
- Nephropathic infantile cystinosis with proximal tubulopathy was diagnosed in all patients.
Conclusions:
- Recommend testing for CTNS-c.971-12G>A in South African patients with cystinosis.
- Suggest offering prenatal testing for at-risk families based on identified mutations.
Background:
The mutations responsible for cystinosis in South African patients are currently unknown. A pertinent question is whether they are similar to those described elsewhere in the world.
Methods:
Children who were being managed for cystinosis in the Western Cape Province of South Africa between 2002 and 2013 were studied. All underwent molecular analysis to detect sequence variations in the cystinosis gene.
Results:
This cohort study included 20 patients, 13 of whom were Xhosa-speaking black South Africans and seven were Cape Coloureds (mixed race); none were Caucasian. All had nephropathic infantile-type cystinosis with evidence of proximal tubulopathy, with glycosuria and renal phosphate wasting. Diagnosis was confirmed in 19 cases by demonstrating an elevated cystine concentration in leukocytes. Molecular analysis of the cystinosin gene revealed that 19 patients had a G > A mutation in intron 11 (CTNS-c.971-12G > A p.D324AfsX44) which caused an out-of-frame 10-bp insertion. Of these 19 patients, 16 were homozygous for this mutation, which was the most frequent mutation identified in the alleles of the black South African and Cape Coloured patients (96 and 71 %, respectively).
Conclusion:
We recommend that black South African and Cape Coloured patients presenting with cystinosis be tested for CTNS-c.971-12G > A in the first instance, with the possibility of prenatal testing being offered to at-risk families.
Related Concept Videos
Cystic Fibrosis: Pathogenesis
CF is primarily caused by a genetic mutation in a chromosome 7 gene coding for the cystic fibrosis transmembrane conductance regulator (CFTR) protein. The most common gene mutation leading to CF is the ΔF508 mutation,...
Mutations
Mutations
Chromosomal Alterations Are Large-Scale Mutations
While point mutations are changes in a single nucleotide in...
Inborn Errors of Metabolism
Translation
Translation is the process of synthesizing proteins from the genetic information carried by messenger RNA (mRNA). Following transcription, it constitutes the final step in the expression of genes. This process is carried out by ribosomes, complexes of protein and specialized RNA molecules. Ribosomes, transfer RNA (tRNA), and other proteins produce a chain of amino acids—the polypeptide—as the end product of translation.
Translation Produces the Building Blocks of...
Translation
Translation Produces the Building Blocks of Life
Proteins are...

