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Primer-Free Aptamer Selection Using A Random DNA Library
Published on: July 26, 2010
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A catalyst selection protocol that identifies biomimetic motifs from β-hairpin libraries
Masaomi Matsumoto1, Stephen J Lee, Marcey L Waters
1Department of Chemistry, University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599-3290, United States.
Journal of the American Chemical Society
|October 28, 2014
Summary
Researchers developed a method to select histidine-containing peptides that act as catalysts in organic solvents. These catalysts mimic enzyme active sites, significantly accelerating acyl- and phosphonyl-transfer reactions with rate accelerations up to 2.4 × 10^8.
Area of Science:
- Biochemistry
- Organic Chemistry
- Catalysis
Background:
- Enzyme active sites utilize histidine residues to catalyze crucial biochemical reactions.
- Mimicking enzyme catalytic strategies in synthetic systems is a key challenge in chemistry.
Purpose of the Study:
- To develop a method for selecting peptide catalysts that replicate histidine-based enzyme catalysis.
- To identify catalysts that accelerate acyl- and phosphonyl-transfer reactions in organic solvents.
Main Methods:
- Solid-phase synthesis of a peptide library containing histidine residues.
- Application of a reactive tagging scheme for selection in organic solvents.
- Kinetic analysis to determine catalytic efficiency (krel).
Main Results:
- Successful selection of histidine-containing β-hairpin peptides with catalytic activity.
- Achieved rate accelerations (krel) of up to 2.4 × 10^8 in organic solvents.
- Demonstrated that selected catalysts reproduce His-based enzyme active site strategies.
Conclusions:
- Solid-phase selection coupled with reactive tagging is effective for discovering peptide catalysts.
- Histidine-containing peptides can be engineered to efficiently catalyze acyl- and phosphonyl-transfer reactions in non-aqueous environments.
- This approach offers a route to artificial enzymes for organic synthesis.

