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Updated: Apr 21, 2026

Plasmid-derived DNA Strand Displacement Gates for Implementing Chemical Reaction Networks
Published on: November 25, 2015
Searching for feasible stationary states in reaction networks by solving a Boolean constraint satisfaction problem
A Seganti1, A De Martino2, F Ricci-Tersenghi3
1Dipartimento di Fisica, Sapienza Università di Roma, p.le A. Moro 2, 00185 Rome, Italy.
Abstract:
We analyze the solutions, on single network instances, of a recently introduced class of constraint-satisfaction problems (CSPs), describing feasible steady states of chemical reaction networks. First, we show that the CSPs generalize the scheme known as network expansion, which is recovered in a specific limit. Next, a full statistical mechanics characterization (including the phase diagram and a discussion of the physical origin of the phase transitions) for network expansion is obtained. Finally, we provide a message-passing algorithm to solve the original CSPs in the most general form.
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