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Updated: Apr 21, 2026

Digital PCR-based Competitive Index for High-throughput Analysis of Fitness in Salmonella
Published on: May 13, 2019
Fitness of Salmonella mutants resistant to antimicrobial peptides
Hava Lofton1, Naeem Anwar2, Mikael Rhen3
1Department of Medical Biochemistry and Microbiology, Uppsala University, SE-75123 Uppsala, Sweden.
Objectives:
To examine the effects of mutations in the waaY, phoP and pmrB genes, which confer resistance to antimicrobial peptides (AMPs), on fitness of Salmonella Typhimurium.
Methods:
Survival during low pH, oxidative stress, stationary-phase incubation, exposure to serum and bile and growth in mice and laboratory media were determined by time-kills, disc inhibition assays, competition experiments and optical density measurements.
Results:
Individual mutations in the waaY gene (involved in LPS core biosynthesis) and in the phoP and pmrB genes (part of two different two-component regulatory systems, phoPQ and pmrAB) conferred no or minor effects on bacterial survival during stressful in vitro conditions or in mice. In contrast, a waaY-phoP-pmrB triple mutant was compromised under most assay conditions.
Conclusions:
Results from this study show that AMP resistance can be cost-free, as assessed by several assays that attempt to mimic the conditions a bacterium might encounter within a host. Our findings imply that future therapeutic use of AMPs could select for fit mutants with cross-resistance to human defence peptides and that potential resistance development in response to therapeutic use of AMPs needs to be carefully monitored.
Insights
Antimicrobial peptide (AMP) resistance mutations in Salmonella Typhimurium can be cost-free. However, a triple mutant showed reduced fitness, suggesting careful monitoring for resistance development during AMP therapy is crucial.
Area of Science:
- Microbiology
- Bacterial genetics
- Antimicrobial resistance
Background:
- Antimicrobial peptides (AMPs) are crucial components of the innate immune system.
- Mutations in waaY, phoP, and pmrB genes confer resistance to AMPs in Salmonella Typhimurium.
- Understanding the fitness costs associated with AMP resistance is vital for predicting therapeutic outcomes.
Purpose of the Study:
- To investigate the impact of specific gene mutations (waaY, phoP, pmrB) on the fitness of Salmonella Typhimurium.
- To assess the survival and growth of mutant strains under various stress conditions.
- To evaluate the implications of AMP resistance for bacterial adaptation and host defense.
Main Methods:
- Assessing bacterial survival through time-kill assays and disc inhibition tests.
- Evaluating growth dynamics using optical density measurements and competition experiments.
- Testing bacterial fitness under conditions simulating host environments, including low pH, oxidative stress, serum, and bile exposure, as well as in vivo mouse models.
Main Results:
- Single mutations in waaY, phoP, or pmrB genes had minimal impact on Salmonella Typhimurium fitness under tested conditions.
- A waaY-phoP-pmrB triple mutant exhibited significantly compromised survival and growth across multiple in vitro and in vivo assays.
- AMP resistance can be achieved with little to no fitness cost in Salmonella Typhimurium.
Conclusions:
- AMP resistance can be phenotypically neutral, posing a challenge for host defense.
- Therapeutic use of AMPs may inadvertently select for highly fit, resistant bacterial mutants.
- Close monitoring for the emergence of cross-resistance to host defense peptides is recommended during AMP treatment.
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