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Updated: Apr 21, 2026

Unraveling Entropic Rate Acceleration Induced by Solvent Dynamics in Membrane Enzymes
Published on: January 16, 2016
Tunneling isomerization of small carboxylic acids and their complexes in solid matrixes: a computational insight
Masashi Tsuge1,2, Leonid Khriachtchev1
1†Department of Chemistry, University of Helsinki, P.O. Box 55, Helsinki FI-00014, Finland.
Abstract:
We have studied hydrogen-atom tunneling in the cis-to-trans conformational change of some carboxylic acid monomers and formic acid (FA) complexes and dimers at the MP2(full) and CCSD(T) levels of theory within the Wentzel-Kramers-Brillouin approximation. The barrier for the minimum energy path, where the OH bond length and the COH bending angle are optimized, is found to be a good approximation for providing the highest barrier transparency. The matrix effect on the transmission coefficients of cis-FA monomer, trans-cis FA dimer (tc1), and cis-acetic acid monomer are modeled by the polarizable continuum model (PCM) at the MP2(full) level of theory in different environments. For the cis-FA monomer and trans-cis FA dimer (tc1), the calculated transmission coefficients agree with the experimental lifetimes observed in noble-gas solids. However, this method cannot reproduce the experimental results obtained for cis-acetic acid. Moreover, the long lifetime of cis-FA and cis-acetic acid in the N2 environment cannot be reproduced either, which is most probably due to specific interactions that are not included in the PCM. The calculation for cis-HCOOD shows a strong decrease of the barrier transparency compared to that for cis-HCOOH, which is consistent with the experiments. In general, good agreement is observed between the calculated barrier transparency (including PCM) and experimental tunneling rate. However, some exceptions are found, which shows that additional factors influence the tunneling rate.
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Stereoisomerism
Isomers are different chemical species that have the same chemical formula.
Transition metal complexes often exist as geometric isomers, in which the same atoms are connected through the same types of bonds but with differences in their orientation in space. Coordination complexes with two different ligands in the cis and trans positions from a ligand of interest form isomers. For example, the octahedral [Co(NH3)4Cl2]+ ion has two isomers (Figure 1) In the cis...
Regioselectivity and Stereochemistry of Acid-Catalyzed Hydration

