Fetal exposures and perinatal influences on the stool microbiota of premature infants
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Updated: Apr 21, 2026

A Murine Model of Fetal Exposure to Maternal Inflammation to Study the Effects of Acute Chorioamnionitis on Newborn Intestinal Development
Published on: June 24, 2020
Diana A Chernikova1, Devin C Koestler2, Anne Gatewood Hoen3
1a Department of Genetics , Institute for Quantitative Biomedical Sciences, Geisel School of Medicine, Dartmouth College , Hanover , NH , USA .
Insights
Maternal complications during pregnancy significantly impact the gut microbiome development in premature infants. Exposure to a non-sterile intrauterine environment increases pathogenic bacteria, affecting infant gut colonization patterns.
Area of Science:
- Microbiology
- Neonatalogy
- Gastroenterology
Background:
- The gut microbiome plays a crucial role in infant health and development.
- Premature infants, especially those with very low birth weight, are at higher risk for dysbiosis.
- Understanding factors influencing early gut colonization is vital for neonatal care.
Purpose of the Study:
- To investigate the impact of maternal complications on the gut microbiome of very low birth weight infants.
- To determine if prenatal exposure to a non-sterile intrauterine environment affects infant gut bacterial composition.
- To assess the influence of delivery mode on the developing intestinal microbiota.
Main Methods:
- Prospective longitudinal study of nine extremely premature infants.
- Weekly serial stool sample collection and 16S rRNA gene sequencing for microbiome analysis.
- Linear mixed effects models to analyze relationships between perinatal complications and microbiome development.
Main Results:
- Infants exposed to prolonged preterm premature rupture of membranes (PPPROM) or chorioamnionitis showed higher abundance of potentially pathogenic bacteria.
- Vaginally delivered infants had significantly lower gut microbiota diversity compared to those delivered by Cesarean section.
- These microbiome alterations persisted throughout the study period, irrespective of postnatal antibiotic exposure.
Conclusions:
- Maternal complications, particularly those involving a non-sterile intrauterine environment, significantly alter the gut microbiome composition and diversity in premature infants.
- The observed changes in the infant gut microbiota are persistent over time.
- Findings highlight the critical role of the maternal environment in shaping neonatal gut colonization.
Objective:
To test the hypothesis that maternal complications significantly affect gut colonization patterns in very low birth weight infants.
Methods:
Forty-nine serial stool samples were obtained weekly from nine extremely premature infants enrolled in a prospective longitudinal study. Sequencing of the bacterial 16S rRNA gene from stool samples was performed to approximate the intestinal microbiome. Linear mixed effects models were used to evaluate relationships between perinatal complications and intestinal microbiome development.
Results:
Subjects with prenatal exposure to a non-sterile intrauterine environment, i.e. prolonged preterm premature rupture of membranes (PPPROM) and chorioamnionitis exposure, were found to have a relatively higher abundance of potentially pathogenic bacteria in the stool across all time points compared to subjects without those exposures, irrespective of exposure to postnatal antibiotics. Compared with those delivered by Caesarean section, vaginally delivered subjects were found to have significantly lower diversity of stool microbiota across all time points, with lower abundance of many genera, most in the family Enterobacteriaceae.
Conclusions:
We identified persistently increased potential pathogen abundance in the developing stool microbiota of subjects exposed to a non-sterile uterine environment. Maternal complications appear to significantly influence the diversity and bacterial composition of the stool microbiota of premature infants, with findings persisting over time.
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