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Analysis of RNA Processing Reactions Using Cell Free Systems: 3' End Cleavage of Pre-mRNA Substrates in vitro
Published on: May 3, 2014
RNase MRP cleaves pre-tRNASer-Met in the tRNA maturation pathway
Yuichiro Saito1, Jun Takeda2, Kousuke Adachi1
1Department of Chemistry, Graduate School of Science and Engineering, Tokyo Metropolitan University, Tokyo, Japan.
Abstract:
Ribonuclease mitochondrial RNA processing (RNase MRP) is a multifunctional ribonucleoprotein (RNP) complex that is involved in the maturation of various types of RNA including ribosomal RNA. RNase MRP consists of a potential catalytic RNA and several protein components, all of which are required for cell viability. We show here that the temperature-sensitive mutant of rmp1, the gene for a unique protein component of RNase MRP, accumulates the dimeric tRNA precursor, pre-tRNA(Ser-Met). To examine whether RNase MRP mediates tRNA maturation, we purified the RNase MRP holoenzyme from the fission yeast Schizosaccharomyces pombe and found that the enzyme directly and selectively cleaves pre-tRNA(Ser-Met), suggesting that RNase MRP participates in the maturation of specific tRNA in vivo. In addition, mass spectrometry-based ribonucleoproteomic analysis demonstrated that this RNase MRP consists of one RNA molecule and 11 protein components, including a previously unknown component Rpl701. Notably, limited nucleolysis of RNase MRP generated an active catalytic core consisting of partial mrp1 RNA fragments, which constitute "Domain 1" in the secondary structure of RNase MRP, and 8 proteins. Thus, the present study provides new insight into the structure and function of RNase MRP.
Insights
Ribonuclease mitochondrial RNA processing (RNase MRP) is crucial for RNA maturation. This study reveals RNase MRP directly cleaves tRNA precursors, highlighting its role in specific tRNA processing and uncovering its core catalytic structure.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Ribonuclease mitochondrial RNA processing (RNase MRP) is a vital ribonucleoprotein complex essential for cell viability.
- It plays a role in the maturation of various RNA types, including ribosomal RNA.
Purpose of the Study:
- To investigate the role of RNase MRP in tRNA maturation.
- To elucidate the structural and functional aspects of RNase MRP.
Main Methods:
- Utilized a temperature-sensitive mutant of rmp1 in Schizosaccharomyces pombe to observe precursor accumulation.
- Purified RNase MRP holoenzyme for in vitro cleavage assays.
- Performed mass spectrometry-based ribonucleoproteomic analysis.
- Conducted limited nucleolysis to identify the catalytic core.
Main Results:
- A temperature-sensitive mutant accumulated dimeric tRNA precursor, pre-tRNA(Ser-Met), indicating a role for RNase MRP in tRNA processing.
- Purified RNase MRP directly and selectively cleaved pre-tRNA(Ser-Met).
- RNase MRP comprises one RNA molecule and 11 proteins, including the novel component Rpl701.
- An active catalytic core was identified, consisting of specific RNA fragments and 8 proteins.
Conclusions:
- RNase MRP is directly involved in the in vivo maturation of specific tRNAs.
- The study identified a novel protein component (Rpl701) and delineated the catalytic core of RNase MRP, advancing understanding of its structure-function relationship.
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