RNase MRP cleaves pre-tRNASer-Met in the tRNA maturation pathway

Yuichiro Saito1, Jun Takeda2, Kousuke Adachi1

  • 1Department of Chemistry, Graduate School of Science and Engineering, Tokyo Metropolitan University, Tokyo, Japan.

Plos One
|November 18, 2014
PubMed

Insights

Ribonuclease mitochondrial RNA processing (RNase MRP) is crucial for RNA maturation. This study reveals RNase MRP directly cleaves tRNA precursors, highlighting its role in specific tRNA processing and uncovering its core catalytic structure.

Area of Science:

  • Molecular Biology
  • Biochemistry
  • Genetics

Background:

  • Ribonuclease mitochondrial RNA processing (RNase MRP) is a vital ribonucleoprotein complex essential for cell viability.
  • It plays a role in the maturation of various RNA types, including ribosomal RNA.

Purpose of the Study:

  • To investigate the role of RNase MRP in tRNA maturation.
  • To elucidate the structural and functional aspects of RNase MRP.

Main Methods:

  • Utilized a temperature-sensitive mutant of rmp1 in Schizosaccharomyces pombe to observe precursor accumulation.
  • Purified RNase MRP holoenzyme for in vitro cleavage assays.
  • Performed mass spectrometry-based ribonucleoproteomic analysis.
  • Conducted limited nucleolysis to identify the catalytic core.

Main Results:

  • A temperature-sensitive mutant accumulated dimeric tRNA precursor, pre-tRNA(Ser-Met), indicating a role for RNase MRP in tRNA processing.
  • Purified RNase MRP directly and selectively cleaved pre-tRNA(Ser-Met).
  • RNase MRP comprises one RNA molecule and 11 proteins, including the novel component Rpl701.
  • An active catalytic core was identified, consisting of specific RNA fragments and 8 proteins.

Conclusions:

  • RNase MRP is directly involved in the in vivo maturation of specific tRNAs.
  • The study identified a novel protein component (Rpl701) and delineated the catalytic core of RNase MRP, advancing understanding of its structure-function relationship.

Related Concept Videos

Transfer RNA Synthesis02:36

Transfer RNA Synthesis

One of the unique features of tRNA is the presence of modified bases. In some tRNAs, modified bases account for nearly 20% of the total bases in the molecule. Altogether, these unusual bases protect the tRNA from enzymatic degradation by RNases.
Each of these chemical modifications is carried by a specific enzyme, post-transcription. All of these enzymes have unique base and site-specificity. Methylation, the most common chemical modification, is carried by at least nine different enzymes, with...
13.9K
Transfer RNA Synthesis02:35

Transfer RNA Synthesis

4.1K
Bacterial Protein Maturation01:26

Bacterial Protein Maturation

Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
738
tRNA Activation02:26

tRNA Activation

Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
24.9K
tRNA Activation02:26

tRNA Activation

9.3K
Nonsense-mediated mRNA Decay02:27

Nonsense-mediated mRNA Decay

The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
12.3K